Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   CACET_RS09305 Genome accession   NZ_CP009687
Coordinates   1978978..1979925 (-) Length   315 a.a.
NCBI ID   WP_044822916.1    Uniprot ID   -
Organism   Clostridium aceticum strain DSM 1496     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1973978..1984925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CACET_RS09290 (CACET_c19040) - 1976189..1977163 (-) 975 WP_044822919.1 siderophore ABC transporter substrate-binding protein -
  CACET_RS09295 (CACET_c19050) - 1977279..1978034 (-) 756 WP_044822918.1 ATP-binding cassette domain-containing protein -
  CACET_RS09300 (CACET_c19060) - 1978031..1978981 (-) 951 WP_044822917.1 iron chelate uptake ABC transporter family permease subunit -
  CACET_RS09305 (CACET_c19070) ceuB 1978978..1979925 (-) 948 WP_044822916.1 ABC transporter permease Machinery gene
  CACET_RS09310 (CACET_c19080) - 1980126..1980899 (+) 774 WP_044822915.1 AraC family transcriptional regulator -
  CACET_RS09315 (CACET_c19090) - 1980988..1981527 (-) 540 WP_044822914.1 nitroreductase family protein -
  CACET_RS09320 (CACET_c19100) - 1981911..1984655 (+) 2745 WP_052661187.1 YheC/YheD family protein -

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 35117.18 Da        Isoelectric Point: 10.1986

>NTDB_id=131248 CACET_RS09305 WP_044822916.1 1978978..1979925(-) (ceuB) [Clostridium aceticum strain DSM 1496]
MKKRYLVYALIILSISSIFIGVKNISFLDILHFNEEKIQILVLSRFPRLISIIVAGIGMSISGLIMQQITRNKFVSPTTA
ATVDSARLGILVSLLLYSSASSLQKMLISFAFSLGGTFLFIKILKRVRYKNEIFVPLVGIMLGNIIDAVTTFFAYRYDLV
QNISSWLQGDFSMVIRGRYELLYFSIPLTIMAYLYANQFTVAGMGEEFSTNLGLNYNKVVNIGLIIVALLTSLVVITVGR
IPFLGLIIPNIVTIYQGDHLKKNLLPTALLGAVFLLFCDILGRIIIYPYEVSIGLTTGILGSLIFLYLLVRGNKR

Nucleotide


Download         Length: 948 bp        

>NTDB_id=131248 CACET_RS09305 WP_044822916.1 1978978..1979925(-) (ceuB) [Clostridium aceticum strain DSM 1496]
ATGAAAAAAAGATACTTAGTTTATGCATTGATTATACTCTCTATTTCTTCTATTTTTATAGGAGTAAAAAATATTAGTTT
CTTAGATATCCTGCATTTTAATGAAGAAAAGATTCAAATATTAGTATTGAGTCGATTCCCTCGATTGATTAGTATTATCG
TAGCTGGTATAGGCATGAGCATAAGTGGTTTGATTATGCAGCAGATTACCCGCAATAAATTTGTATCACCAACAACAGCT
GCAACAGTAGATAGTGCTAGATTAGGGATTTTGGTTTCTCTTTTACTCTATTCTTCTGCCAGCAGTCTTCAAAAAATGTT
GATTTCTTTTGCTTTTTCCTTAGGAGGAACATTTCTCTTTATAAAGATTTTAAAAAGAGTAAGATATAAGAACGAAATTT
TTGTACCACTTGTTGGTATTATGTTAGGCAATATTATAGATGCTGTTACCACCTTTTTTGCCTATAGGTATGACCTTGTA
CAAAATATTTCCTCATGGTTGCAAGGAGACTTTTCTATGGTGATCAGGGGCAGGTACGAACTACTGTATTTCAGTATCCC
TCTTACCATCATGGCTTATTTATATGCTAATCAATTCACAGTAGCAGGAATGGGAGAAGAGTTTTCTACAAACCTAGGAC
TGAATTATAACAAAGTTGTTAACATAGGCTTGATCATTGTGGCCTTATTAACTTCACTTGTAGTGATTACTGTAGGGCGA
ATACCCTTTTTAGGATTGATTATTCCAAACATTGTAACCATTTATCAAGGGGATCACTTAAAAAAGAATCTTTTACCCAC
CGCTTTACTGGGGGCAGTATTCTTGCTGTTTTGCGACATCCTTGGGCGAATCATCATTTATCCCTATGAGGTTTCCATCG
GACTGACCACGGGTATATTGGGAAGCCTGATATTTCTCTATTTATTGGTAAGGGGGAATAAGCGATGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.948

97.778

0.508

Multiple sequence alignment