Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EO53_RS13380 Genome accession   NZ_CP009685
Coordinates   2673692..2674321 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli str. K-12 substr. MG1655 strain K-12     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2668692..2679321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EO53_RS13365 (EO53_13365) helD 2668934..2670988 (-) 2055 WP_001295354.1 DNA helicase IV -
  EO53_RS13370 (EO53_13370) yccF 2671111..2671557 (+) 447 WP_001261235.1 YccF domain-containing protein -
  EO53_RS13375 (EO53_13375) yccS 2671567..2673729 (+) 2163 WP_000875061.1 YccS family putative transporter -
  EO53_RS13380 (EO53_13380) sxy/tfoX 2673692..2674321 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  EO53_RS13385 (EO53_13385) sulA 2674540..2675049 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  EO53_RS13395 (EO53_13395) ompA 2675406..2676446 (+) 1041 WP_000750416.1 porin OmpA -
  EO53_RS13400 (EO53_13400) matP 2676522..2676974 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  EO53_RS13405 (EO53_13405) ycbZ 2677160..2678920 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=131178 EO53_RS13380 WP_000839153.1 2673692..2674321(-) (sxy/tfoX) [Escherichia coli str. K-12 substr. MG1655 strain K-12]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=131178 EO53_RS13380 WP_000839153.1 2673692..2674321(-) (sxy/tfoX) [Escherichia coli str. K-12 substr. MG1655 strain K-12]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment