Detailed information    

insolico Bioinformatically predicted

Overview


Name   comGA   Type   Machinery gene
Locus tag   SAGV69_RS04470 Genome accession   NZ_CP009681
Coordinates   862561..863535 (+) Length   324 a.a.
NCBI ID   WP_000697228.1    Uniprot ID   A0A0D3Q868
Organism   Staphylococcus aureus strain Gv69     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 857561..868535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAGV69_RS04435 (SAGV69_00895) rpmG 858021..858170 (+) 150 WP_001265709.1 50S ribosomal protein L33 -
  SAGV69_RS04440 (SAGV69_00896) - 858379..858918 (+) 540 WP_000164545.1 5-formyltetrahydrofolate cyclo-ligase -
  SAGV69_RS04445 (SAGV69_00897) - 858930..860393 (+) 1464 WP_001017867.1 rhomboid family intramembrane serine protease -
  SAGV69_RS04450 - 860374..860577 (+) 204 WP_000087561.1 YqgQ family protein -
  SAGV69_RS04455 (SAGV69_00898) - 860574..861560 (+) 987 WP_000161314.1 ROK family glucokinase -
  SAGV69_RS04460 (SAGV69_00899) - 861560..861889 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  SAGV69_RS04465 (SAGV69_00900) - 861886..862509 (+) 624 WP_042857058.1 MBL fold metallo-hydrolase -
  SAGV69_RS04470 (SAGV69_00901) comGA 862561..863535 (+) 975 WP_000697228.1 competence type IV pilus ATPase ComGA Machinery gene
  SAGV69_RS04475 (SAGV69_00902) comGB 863507..864577 (+) 1071 WP_000775708.1 competence type IV pilus assembly protein ComGB Machinery gene
  SAGV69_RS04480 (SAGV69_00903) comGC 864591..864902 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  SAGV69_RS04485 (SAGV69_00904) comGD 864880..865326 (+) 447 WP_001790850.1 competence type IV pilus minor pilin ComGD Machinery gene
  SAGV69_RS04490 (SAGV69_03578) comGE 865313..865612 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  SAGV69_RS04495 (SAGV69_03579) comGF 865530..866027 (+) 498 WP_001803317.1 competence type IV pilus minor pilin ComGF Machinery gene
  SAGV69_RS04500 - 866124..866270 (+) 147 WP_001789879.1 hypothetical protein -
  SAGV69_RS04505 (SAGV69_00907) - 866260..866784 (+) 525 WP_001015117.1 shikimate kinase -
  SAGV69_RS04510 (SAGV69_00908) gcvT 866943..868034 (+) 1092 WP_000093351.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence


Protein


Download         Length: 324 a.a.        Molecular weight: 36865.01 Da        Isoelectric Point: 9.0399

>NTDB_id=131129 SAGV69_RS04470 WP_000697228.1 862561..863535(+) (comGA) [Staphylococcus aureus strain Gv69]
MKILFQEIINKAIEMKASDVHFIPVKNEVSIKFRINDNLEQYEQIGNSIYQKLLVYMKFQAGLDVSTQQVAQSGRYSYLF
NKIYFLRISTLPLSLGQESCVIRIVPQFFQPQKSTYKFNDFKHLMNKKQGLLLFSGPTGSGKSTLMYQMVSYANKALNLN
VISIEDPVEMQIPGIVQINVNDKAGINYVNSFKAILRCDPDVILIGEIRDKDVAKCVIQASLSGHLVLTTLHATDCKGAI
LRLLEMGISVQELIQATNLIINQRLVTTIKQQRQLVCEILSQQQLRYFFSHNHSLPSSFKNLEDKLDDMTKAGVICETTM
HKYI

Nucleotide


Download         Length: 975 bp        

>NTDB_id=131129 SAGV69_RS04470 WP_000697228.1 862561..863535(+) (comGA) [Staphylococcus aureus strain Gv69]
TTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGATGTACATTTTATTCCAGTTAAAAA
TGAAGTAAGTATTAAATTTAGAATTAATGATAACTTGGAGCAGTATGAACAAATTGGGAATAGCATTTATCAAAAGTTAT
TAGTTTATATGAAGTTTCAAGCTGGGCTTGATGTTTCTACACAGCAAGTCGCACAGAGCGGTCGATATAGTTACCTTTTC
AATAAAATATATTTTTTGAGAATATCAACTTTACCATTGTCACTTGGCCAAGAAAGTTGTGTTATCAGAATTGTACCTCA
ATTTTTTCAACCACAGAAATCAACTTATAAATTCAATGATTTTAAACACCTCATGAATAAGAAACAAGGATTACTATTGT
TTAGTGGACCAACTGGTTCAGGAAAGAGTACATTAATGTATCAAATGGTCTCATACGCGAATAAAGCCTTGAATTTAAAT
GTAATTTCTATAGAGGATCCTGTAGAGATGCAAATTCCTGGTATCGTCCAAATTAATGTGAATGATAAAGCTGGCATAAA
CTATGTAAATTCGTTTAAAGCTATTTTAAGATGTGATCCTGATGTTATTTTAATAGGTGAAATCAGAGATAAAGATGTTG
CCAAGTGTGTTATACAGGCTAGTTTAAGTGGTCACCTTGTTCTGACTACATTGCATGCAACTGATTGTAAAGGTGCTATT
TTAAGGCTATTAGAAATGGGCATTTCTGTACAAGAATTGATACAGGCAACTAACTTAATTATAAACCAACGACTTGTAAC
TACTATTAAGCAACAGCGACAATTAGTATGTGAAATTCTATCTCAGCAACAACTCCGATATTTCTTTTCCCATAATCATT
CATTACCATCATCATTTAAGAACTTAGAAGATAAACTTGATGATATGACAAAAGCAGGTGTCATTTGTGAAACTACAATG
CATAAATACATTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A0D3Q868

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Staphylococcus aureus MW2

99.074

100

0.991

  comGA Staphylococcus aureus N315

99.074

100

0.991


Multiple sequence alignment