Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   SAGV69_RS04240 Genome accession   NZ_CP009681
Coordinates   817975..818661 (+) Length   228 a.a.
NCBI ID   WP_001792568.1    Uniprot ID   A0A133PXY3
Organism   Staphylococcus aureus strain Gv69     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 812975..823661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAGV69_RS04200 (SAGV69_00846) - 812975..813502 (+) 528 WP_000524902.1 YqeG family HAD IIIA-type phosphatase -
  SAGV69_RS04205 (SAGV69_00847) yqeH 813503..814603 (+) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -
  SAGV69_RS04210 (SAGV69_00848) aroE 814617..815423 (+) 807 WP_000666761.1 shikimate dehydrogenase -
  SAGV69_RS04215 (SAGV69_00849) yhbY 815427..815717 (+) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  SAGV69_RS04220 (SAGV69_00850) nadD 815720..816289 (+) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  SAGV69_RS04225 (SAGV69_00851) yqeK 816279..816863 (+) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  SAGV69_RS04230 (SAGV69_00852) rsfS 816864..817217 (+) 354 WP_001088022.1 ribosome silencing factor -
  SAGV69_RS04235 (SAGV69_04194) - 817220..817935 (+) 716 Protein_790 class I SAM-dependent methyltransferase -
  SAGV69_RS04240 (SAGV69_00855) comEA 817975..818661 (+) 687 WP_001792568.1 ComEA family DNA-binding protein Machinery gene
  SAGV69_RS04245 (SAGV69_00856) - 818753..819214 (+) 462 WP_000439693.1 ComE operon protein 2 -
  SAGV69_RS04250 (SAGV69_00857) comEC 819219..821420 (+) 2202 WP_001807336.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  SAGV69_RS04255 (SAGV69_00858) holA 821477..822451 (+) 975 WP_001282562.1 DNA polymerase III subunit delta -
  SAGV69_RS04260 (SAGV69_00859) rpsT 822496..822747 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25863.49 Da        Isoelectric Point: 9.3305

>NTDB_id=131126 SAGV69_RS04240 WP_001792568.1 817975..818661(+) (comEA) [Staphylococcus aureus strain Gv69]
MVLLYQFLLRYKDFLTQWKLYILSAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKVEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHEKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=131126 SAGV69_RS04240 WP_001792568.1 817975..818661(+) (comEA) [Staphylococcus aureus strain Gv69]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTCTAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAAGTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGAAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A133PXY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

98.238

99.561

0.978
  comEA Staphylococcus aureus N315

97.357

99.561

0.969

Multiple sequence alignment