Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BG07_RS25035 Genome accession   NZ_CP009651
Coordinates   4492718..4492996 (+) Length   92 a.a.
NCBI ID   WP_006095231.1    Uniprot ID   -
Organism   Bacillus pseudomycoides strain BTZ     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 4487718..4497996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BG07_RS25025 (BG07_4546) - 4487793..4488707 (+) 915 WP_018781819.1 CPBP family intramembrane glutamic endopeptidase -
  BG07_RS30475 - 4488838..4488993 (+) 156 Protein_4456 IS66 family transposase -
  BG07_RS25030 (BG07_4547) - 4489056..4491839 (-) 2784 WP_040118881.1 dynamin family protein -
  BG07_RS32510 (BG07_4548) - 4492311..4492481 (-) 171 WP_018781817.1 hypothetical protein -
  BG07_RS25035 (BG07_4549) abrB 4492718..4492996 (+) 279 WP_006095231.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  BG07_RS25040 (BG07_4550) hfq 4493202..4493390 (+) 189 WP_006095232.1 RNA chaperone Hfq -
  BG07_RS25045 (BG07_4551) - 4493658..4493993 (-) 336 WP_080740020.1 hypothetical protein -
  BG07_RS33135 - 4494212..4494385 (-) 174 WP_224796121.1 methyltransferase domain-containing protein -
  BG07_RS25050 (BG07_4552) - 4494921..4496363 (+) 1443 WP_006095235.1 PLP-dependent aminotransferase family protein -
  BG07_RS25055 (BG07_4553) - 4496375..4497289 (+) 915 WP_040118879.1 D-alanine--D-alanine ligase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10207.07 Da        Isoelectric Point: 9.9075

>NTDB_id=131010 BG07_RS25035 WP_006095231.1 4492718..4492996(+) (abrB) [Bacillus pseudomycoides strain BTZ]
MKTTGMTRKVDQLGRVVIPKELRNTLGIKEKSPLEIFIKGEDIVLQKYQPGGVCAVTGEVLNRNISLANDKITLSPEGAK
LLIKDLEQYLVK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=131010 BG07_RS25035 WP_006095231.1 4492718..4492996(+) (abrB) [Bacillus pseudomycoides strain BTZ]
ATGAAAACAACCGGAATGACTAGAAAAGTAGATCAATTAGGGCGTGTGGTAATCCCAAAGGAACTTAGAAATACGCTAGG
TATTAAAGAAAAATCACCATTAGAAATCTTTATAAAAGGTGAAGACATTGTTTTACAGAAGTATCAGCCTGGTGGTGTTT
GTGCAGTAACAGGAGAAGTATTAAATCGTAACATATCATTAGCAAATGACAAGATAACATTAAGTCCAGAGGGTGCAAAA
CTGTTAATAAAGGACTTAGAACAGTATCTTGTAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)

AbrB C-terminal domain (AbrB_C)

(53-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.556

97.826

0.543

Multiple sequence alignment