Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   BG07_RS21530 Genome accession   NZ_CP009651
Coordinates   3780902..3781336 (+) Length   144 a.a.
NCBI ID   WP_029426887.1    Uniprot ID   -
Organism   Bacillus pseudomycoides strain BTZ     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3775902..3786336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BG07_RS21505 (BG07_3830) - 3775982..3776563 (+) 582 Protein_3734 substrate-binding domain-containing protein -
  BG07_RS21510 (BG07_3831) - 3776577..3777740 (-) 1164 WP_040118968.1 aminotransferase A -
  BG07_RS21515 (BG07_3832) - 3777840..3778040 (-) 201 WP_003199899.1 hypothetical protein -
  BG07_RS21520 (BG07_3833) - 3778351..3779625 (+) 1275 WP_006095828.1 sensor histidine kinase -
  BG07_RS21525 (BG07_3834) - 3779919..3780662 (-) 744 WP_003199901.1 DUF3967 domain-containing protein -
  BG07_RS21530 (BG07_3835) nucA/comI 3780902..3781336 (+) 435 WP_029426887.1 DNA-entry nuclease Machinery gene
  BG07_RS21535 (BG07_3836) comJ 3781355..3781744 (+) 390 WP_029426889.1 competence protein ComJ -
  BG07_RS30280 - 3781791..3781955 (+) 165 WP_003199904.1 hypothetical protein -
  BG07_RS21540 (BG07_3837) metE 3782063..3784351 (-) 2289 WP_006095826.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  BG07_RS21550 (BG07_3838) - 3784943..3785500 (-) 558 WP_040118967.1 PadR family transcriptional regulator -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16152.63 Da        Isoelectric Point: 9.2388

>NTDB_id=131006 BG07_RS21530 WP_029426887.1 3780902..3781336(+) (nucA/comI) [Bacillus pseudomycoides strain BTZ]
MKQLKGIIISIIAILSILVAVYEAFIPTEPKSKKEVTYDQVLEFPKERYPETGKHIADAIKEGHSKVCTIDRSGAADRRK
LSLAPYPAKKGYDRDEWPMAMCKEGGKDAHIEYINPADNRGAGSWVGNKLDKYPDGTRVKFEVK

Nucleotide


Download         Length: 435 bp        

>NTDB_id=131006 BG07_RS21530 WP_029426887.1 3780902..3781336(+) (nucA/comI) [Bacillus pseudomycoides strain BTZ]
ATGAAACAATTAAAAGGCATTATCATTTCGATTATTGCTATTCTTTCTATTTTAGTTGCTGTCTATGAAGCGTTTATACC
AACAGAACCAAAGAGTAAGAAAGAAGTTACATATGATCAAGTTCTAGAATTTCCAAAAGAACGTTATCCAGAGACGGGGA
AACATATAGCAGATGCGATTAAAGAAGGGCATTCTAAAGTATGTACGATTGATCGAAGTGGTGCAGCTGATAGAAGAAAG
TTGTCTCTAGCTCCATATCCAGCAAAAAAAGGGTACGATCGTGATGAATGGCCAATGGCAATGTGCAAAGAAGGTGGAAA
AGATGCGCATATTGAATATATTAACCCTGCTGATAATAGAGGCGCAGGTTCATGGGTGGGAAATAAGCTAGATAAGTACC
CAGATGGGACACGTGTGAAGTTTGAGGTTAAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(48-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

63.333

83.333

0.528

Multiple sequence alignment