Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   BG07_RS07910 Genome accession   NZ_CP009651
Coordinates   1116387..1118213 (-) Length   608 a.a.
NCBI ID   WP_040119303.1    Uniprot ID   -
Organism   Bacillus pseudomycoides strain BTZ     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1111387..1123213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BG07_RS07875 (BG07_1128) - 1111744..1112541 (-) 798 WP_003195940.1 NAD kinase -
  BG07_RS07880 (BG07_1129) - 1112560..1113198 (-) 639 WP_016113795.1 GTP pyrophosphokinase family protein -
  BG07_RS07885 (BG07_1130) - 1113229..1113600 (-) 372 WP_018781151.1 hypothetical protein -
  BG07_RS07890 (BG07_1131) - 1113745..1114323 (+) 579 WP_006093952.1 CYTH domain-containing protein -
  BG07_RS07895 (BG07_1132) - 1114645..1115043 (+) 399 WP_003195936.1 globin -
  BG07_RS07900 (BG07_1133) - 1115043..1115936 (+) 894 WP_006093953.1 ClpXP adapter SpxH family protein -
  BG07_RS32340 (BG07_1134) - 1116166..1116339 (+) 174 WP_006093954.1 hypothetical protein -
  BG07_RS07910 (BG07_1135) pepF 1116387..1118213 (-) 1827 WP_040119303.1 oligoendopeptidase F Regulator
  BG07_RS07915 (BG07_1136) - 1118260..1119501 (-) 1242 WP_018781153.1 competence protein CoiA -
  BG07_RS07920 (BG07_1137) cls 1119596..1121140 (-) 1545 WP_018781154.1 cardiolipin synthase -
  BG07_RS07925 (BG07_1138) mecA 1121224..1121901 (-) 678 WP_003195931.1 adaptor protein MecA Regulator
  BG07_RS07930 (BG07_1139) - 1122268..1122939 (+) 672 WP_018764011.1 TerC family protein -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 70266.66 Da        Isoelectric Point: 4.7483

>NTDB_id=130968 BG07_RS07910 WP_040119303.1 1116387..1118213(-) (pepF) [Bacillus pseudomycoides strain BTZ]
MSNQKTAKTLPDRSEIEEMNTWRLEDVFQTDEEWEKEFQAVKELLPKLTEFKGKLGDSADSLLAALQYEDEVSMRLGKLY
TYAHMRYDQDTTNSAYQALNDRATNLYSQASSSMAYIVPEILTISEEQLQSFLQENKELSVYEHALEEITRQRPHVLSEA
EEALLAEASEVMSASSNTFGMLNNADLKFPSIKDENGEEVEVTHGRYIQFLESDDRRVRHDAFHAVFETYGKYKNTFAST
LSGAVKRNNFNARVRKYDSARQAALSNNNIPETVYDQLVETVNDNLHLLHRYIDIRKRALGLDELHMYDLYTPLVPEVKM
NVKYEEAQEILLKSLNVLGDEYVEILKEAYENRWVDVYENKGKRSGAYSSGAYGTNPYILMNWHDNVNNLFTLAHEFGHS
VHSYYTRKTQPHVYGDYSIFVAEVASTCNEAILNDYLLKTTEDKKERLYLLNHYLEGFRGTVFRQAMFAEFEHIIHKKVQ
EGHAVTPDMLTEIYYDLNKRYFGDALVIDKEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILEEGQPAVERYINEF
LKAGSSDYPIEVLKKAGVDMASPEPVKEALQVFEEKLNELEALLFEGK

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=130968 BG07_RS07910 WP_040119303.1 1116387..1118213(-) (pepF) [Bacillus pseudomycoides strain BTZ]
ATGTCTAATCAAAAAACAGCAAAAACATTGCCAGACCGCAGTGAGATTGAAGAAATGAACACATGGCGTTTGGAAGATGT
TTTCCAAACTGATGAAGAATGGGAAAAAGAATTTCAAGCAGTAAAAGAATTACTACCAAAGTTAACTGAATTTAAGGGGA
AACTTGGTGATTCTGCGGATTCATTATTAGCGGCTTTACAATATGAAGATGAAGTCTCAATGAGATTAGGAAAATTATAT
ACATATGCTCATATGCGTTACGATCAAGATACAACAAATTCTGCTTATCAAGCGCTAAATGATCGAGCAACAAACTTATA
TTCTCAAGCGTCCAGCAGCATGGCGTATATCGTTCCTGAAATTTTAACAATTTCAGAAGAACAATTACAGTCGTTCTTAC
AAGAAAATAAAGAATTAAGTGTGTATGAACATGCGTTAGAAGAAATTACACGTCAGCGTCCGCATGTACTGTCAGAGGCG
GAAGAAGCATTGTTAGCAGAAGCATCTGAAGTTATGAGTGCATCAAGTAATACATTTGGTATGCTTAATAATGCGGATTT
AAAATTCCCATCTATTAAAGATGAAAATGGTGAAGAAGTAGAAGTAACACATGGCCGTTATATTCAATTTTTAGAAAGCG
ATGATCGTCGTGTTCGTCATGATGCATTCCATGCTGTTTTTGAAACGTATGGGAAATATAAAAATACATTTGCAAGCACA
CTTAGTGGTGCAGTGAAACGTAATAATTTCAACGCGCGCGTTCGTAAATACGATTCTGCACGCCAAGCTGCGTTAAGCAA
TAATAACATACCTGAAACAGTATATGACCAACTTGTCGAAACAGTAAATGATAACTTACATTTATTGCACCGTTATATTG
ATATTCGTAAACGTGCACTAGGTCTTGATGAACTGCATATGTACGATTTATATACACCACTTGTACCAGAAGTGAAAATG
AATGTGAAATATGAAGAGGCACAAGAGATTCTGTTGAAATCTTTAAACGTCCTTGGTGATGAGTATGTTGAGATTTTGAA
AGAAGCATATGAAAATCGCTGGGTAGATGTATATGAAAACAAAGGAAAACGAAGCGGTGCGTATTCATCTGGTGCATATG
GAACAAATCCGTATATTTTAATGAACTGGCATGATAATGTAAATAATTTATTTACACTTGCACATGAGTTTGGTCATTCT
GTGCATAGCTACTATACAAGAAAAACACAGCCACATGTATATGGTGACTATTCCATATTCGTTGCGGAAGTTGCATCAAC
TTGTAACGAAGCAATTTTAAATGATTACTTATTAAAAACGACAGAAGATAAGAAAGAACGTTTATATTTATTAAATCATT
ATTTAGAAGGATTCCGCGGAACTGTATTCCGTCAAGCGATGTTTGCTGAATTTGAACATATCATTCATAAAAAGGTACAA
GAAGGCCATGCAGTAACGCCAGATATGTTAACAGAGATTTACTATGATTTAAATAAAAGATACTTTGGCGATGCTTTAGT
CATCGATAAAGAAATTGGTTTAGAGTGGTCTCGTATTCCGCACTTCTATTACAACTATTATGTTTATCAATATGCAACAG
GATTTAGTGCGGCAACAGCCTTATCAAAGCAAATTTTAGAAGAAGGACAACCAGCAGTAGAACGTTATATTAACGAATTC
TTAAAAGCTGGAAGCTCCGACTATCCAATTGAAGTATTGAAAAAAGCAGGAGTAGATATGGCATCACCAGAGCCTGTTAA
AGAGGCATTACAAGTATTTGAAGAGAAGTTAAATGAATTAGAAGCGCTATTATTTGAAGGTAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-591)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.329

98.026

0.484

Multiple sequence alignment