Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   BG07_RS07315 Genome accession   NZ_CP009651
Coordinates   998468..998791 (+) Length   107 a.a.
NCBI ID   WP_003196031.1    Uniprot ID   A0AAJ1Z072
Organism   Bacillus pseudomycoides strain BTZ     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 993468..1003791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BG07_RS07300 (BG07_1013) - 993810..995177 (-) 1368 WP_018781071.1 aldehyde dehydrogenase -
  BG07_RS07305 (BG07_1014) - 995506..997887 (-) 2382 WP_040119324.1 immune inhibitor A domain-containing protein -
  BG07_RS07310 (BG07_1015) - 998254..998385 (+) 132 WP_003196032.1 anti-repressor SinI family protein -
  BG07_RS07315 (BG07_1016) sinR 998468..998791 (+) 324 WP_003196031.1 helix-turn-helix domain-containing protein Regulator
  BG07_RS07320 (BG07_1017) calY 998888..999481 (-) 594 WP_003196030.1 biofilm matrix protein CalY -
  BG07_RS07325 (BG07_1018) - 999712..1000380 (-) 669 WP_018781073.1 TasA family protein -
  BG07_RS07330 (BG07_1019) - 1000454..1001044 (-) 591 WP_006094072.1 CalY family protein -
  BG07_RS07335 (BG07_1020) - 1001206..1002045 (-) 840 WP_018781074.1 DUF4047 domain-containing protein -
  BG07_RS33710 - 1002287..1002334 (-) 48 WP_371388584.1 hypothetical protein -
  BG07_RS07340 (BG07_1021) sipW 1002538..1003113 (-) 576 WP_016113886.1 signal peptidase I SipW -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12465.32 Da        Isoelectric Point: 9.6883

>NTDB_id=130967 BG07_RS07315 WP_003196031.1 998468..998791(+) (sinR) [Bacillus pseudomycoides strain BTZ]
MIGERIKRLRLQRGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIANVLQIPVDTLLHDEIPSENQLDSEWTHLV
KEAMNSGVSKEQFREFLEFTKWKRNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=130967 BG07_RS07315 WP_003196031.1 998468..998791(+) (sinR) [Bacillus pseudomycoides strain BTZ]
ATGATAGGAGAACGTATAAAACGCCTTCGGTTGCAAAGAGGGATTTCTTTAACAGAACTTGCTGAAAAAGCAGGTGTTGC
AAAGTCTTATATTAGTTCCATTGAACGTAATTTACAAAAGAACCCTTCCATTCAATTTCTTGAAAAAATTGCTAATGTTC
TGCAAATTCCCGTGGATACGCTCCTTCATGACGAAATACCATCCGAAAATCAATTGGATTCGGAATGGACACATCTCGTC
AAAGAAGCCATGAACTCCGGTGTATCAAAAGAACAGTTTCGTGAATTTTTAGAGTTTACAAAATGGAAGAGAAATCAGAA
ATAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(72-99)

Helix-turn-helix (HTH_3)

(6-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

65.138

100

0.664

Multiple sequence alignment