Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   AK40_RS24845 Genome accession   NZ_CP009641
Coordinates   4056960..4057244 (-) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus cereus 03BB108     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 4051960..4062244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AK40_RS24810 (AK40_4182) tmk 4052114..4052740 (+) 627 WP_000677233.1 dTMP kinase -
  AK40_RS24815 (AK40_4183) holB 4052776..4053759 (+) 984 WP_000169577.1 DNA polymerase III subunit delta' -
  AK40_RS24820 (AK40_4184) - 4053765..4054592 (+) 828 WP_000272429.1 stage 0 sporulation family protein -
  AK40_RS24825 (AK40_4185) yabA 4054607..4054957 (+) 351 WP_000412056.1 DNA replication initiation control protein YabA -
  AK40_RS24830 (AK40_4186) - 4055078..4055818 (+) 741 WP_001055350.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  AK40_RS24835 (AK40_4187) - 4055805..4056095 (+) 291 WP_000414341.1 GIY-YIG nuclease family protein -
  AK40_RS24840 (AK40_4188) rsmI 4056064..4056939 (+) 876 WP_000267810.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  AK40_RS24845 (AK40_4189) abrB 4056960..4057244 (-) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  AK40_RS24850 (AK40_4190) metG 4057735..4059717 (+) 1983 WP_000134150.1 methionine--tRNA ligase -
  AK40_RS24855 (AK40_4191) - 4059883..4060650 (+) 768 WP_000895819.1 TatD family hydrolase -
  AK40_RS24860 (AK40_4192) rnmV 4060865..4061422 (+) 558 WP_000692830.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=130911 AK40_RS24845 WP_000843036.1 4056960..4057244(-) (abrB) [Bacillus cereus 03BB108]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=130911 AK40_RS24845 WP_000843036.1 4056960..4057244(-) (abrB) [Bacillus cereus 03BB108]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCACTTGAAATCTATGTTGATGACGAGAAAATCATCTTAAAAAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGATGGTAACCTATCTTTAGCTGAAGGTAAAATTATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851

Multiple sequence alignment