Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   WX60_RS08940 Genome accession   NZ_CP012027
Coordinates   1639863..1640831 (-) Length   322 a.a.
NCBI ID   WP_010359689.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FA6140     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1634863..1645831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WX60_RS08915 - 1635405..1636712 (-) 1308 WP_048589563.1 YadA-like family protein -
  WX60_RS08920 (WX60_01693) - 1636698..1637351 (+) 654 WP_048589543.1 IS1595 family transposase -
  WX60_RS08925 (WX60_01694) - 1637386..1638144 (-) 759 WP_003696519.1 ABC transporter ATP-binding protein -
  WX60_RS08930 (WX60_01695) - 1638228..1638854 (-) 627 WP_003690385.1 FmdE family protein -
  WX60_RS08935 (WX60_01696) - 1638899..1639873 (-) 975 WP_010359688.1 iron chelate uptake ABC transporter family permease subunit -
  WX60_RS08940 (WX60_01697) ceuB 1639863..1640831 (-) 969 WP_010359689.1 ABC transporter permease Machinery gene
  WX60_RS13025 - 1640850..1641041 (-) 192 WP_162488780.1 hypothetical protein -
  WX60_RS08945 (WX60_01698) - 1641059..1642024 (-) 966 WP_010359690.1 siderophore ABC transporter substrate-binding protein -
  WX60_RS08950 (WX60_01699) fetA 1642176..1644317 (-) 2142 WP_010356155.1 TonB-dependent siderophore receptor FetA/FrpB -
  WX60_RS08955 (WX60_01700) - 1644823..1645113 (+) 291 WP_002214868.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 34406.67 Da        Isoelectric Point: 10.0891

>NTDB_id=130882 WX60_RS08940 WP_010359689.1 1639863..1640831(-) (ceuB) [Neisseria gonorrhoeae strain FA6140]
MTAKPFSLNLANLLLPAVLFAVSLSVGVADFRWSDVFSLSDSQQVMFISRLPRTFAIVLTGASMAVAGMIMQILMRNRFV
EPSMAGAGQSAALGLLLMSLLLPAAPLPVKMSVAAVAALIGMLVFMLLIRRLPPTAQLMVPLVGIIFGGVVEAVATFVAY
EFEMLQMLGVWQQGDFSSVLLGRYELLWITGGLAVFAYLIADRLTILGLGETVSVNLGLNRTAVLWSGLIIVALITSLVI
VTVGNIPFIGLVVPNIVSRLTGDRLRQSLPAVALLGASMVLLCDILGRMIVFPFEIPVSTVFGVLGTALFLWLLLRKPAH
AV

Nucleotide


Download         Length: 969 bp        

>NTDB_id=130882 WX60_RS08940 WP_010359689.1 1639863..1640831(-) (ceuB) [Neisseria gonorrhoeae strain FA6140]
ATGACTGCCAAACCTTTTTCCCTCAACCTGGCCAACCTCCTGCTGCCGGCGGTATTGTTTGCCGTCAGCCTGTCGGTCGG
CGTTGCCGATTTCCGCTGGTCGGATGTGTTTTCGCTGTCCGACAGCCAGCAAGTGATGTTCATCAGCCGCCTGCCGCGCA
CGTTTGCGATTGTGTTGACGGGCGCGTCGATGGCGGTGGCGGGGATGATTATGCAGATTCTGATGCGCAACCGTTTTGTC
GAGCCTTCTATGGCGGGTGCGGGCCAAAGTGCGGCTTTGGGTTTGCTTCTGATGTCCCTGCTGCTGCCTGCCGCGCCGCT
GCCGGTCAAAATGTCGGTTGCCGCCGTTGCCGCGCTGATCGGGATGTTGGTCTTTATGCTGCTGATCCGCCGCCTGCCGC
CGACGGCGCAACTGATGGTGCCGCTGGTGGGGATTATTTTCGGCGGCGTGGTTGAGGCGGTGGCGACGTTTGTCGCGTAT
GAGTTTGAGATGCTGCAAATGCTCGGCGTGTGGCAGCAGGGCGATTTTTCGAGCGTGCTGCTGGGGCGGTACGAGCTGCT
TTGGATTACGGGCGGTTTGGCGGTGTTTGCCTACCTGATTGCCGACCGGCTGACGATTTTGGGGCTGGGCGAAACGGTGA
GCGTGAATTTGGGTTTGAACCGGACGGCGGTGTTGTGGTCGGGTTTGATTATTGTGGCACTGATTACATCGCTGGTCATT
GTAACGGTCGGCAATATTCCGTTTATCGGGCTGGTCGTGCCGAATATCGTCAGCCGCCTGACGGGCGACAGGCTGCGCCA
AAGCCTGCCTGCGGTCGCCCTCTTGGGCGCGTCTATGGTGCTGCTGTGCGATATTTTGGGACGCATGATTGTGTTTCCGT
TTGAAATTCCGGTCTCTACGGTTTTTGGTGTGTTGGGTACGGCTTTGTTTTTGTGGCTTTTATTAAGGAAACCTGCCCAT
GCCGTCTGA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(17-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

41.528

93.478

0.388

Multiple sequence alignment