Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   AK40_RS06850 Genome accession   NZ_CP009641
Coordinates   597495..597782 (+) Length   95 a.a.
NCBI ID   WP_000648331.1    Uniprot ID   A0A2A8KZX2
Organism   Bacillus cereus 03BB108     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 592495..602782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AK40_RS06830 (AK40_612) - 593670..593868 (+) 199 Protein_612 DUF4083 domain-containing protein -
  AK40_RS06835 (AK40_613) - 593900..594361 (+) 462 WP_000024996.1 NUDIX hydrolase -
  AK40_RS06840 (AK40_614) nadE 594408..595226 (-) 819 WP_000174879.1 ammonia-dependent NAD(+) synthetase -
  AK40_RS06845 (AK40_615) - 595498..597378 (+) 1881 WP_001995526.1 FtsX-like permease family protein -
  AK40_RS06850 (AK40_616) abrB 597495..597782 (+) 288 WP_000648331.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  AK40_RS06855 (AK40_617) - 598057..599007 (+) 951 WP_001089035.1 serine protease -
  AK40_RS06860 (AK40_618) - 599048..599356 (-) 309 WP_001259894.1 ArsR/SmtB family transcription factor -
  AK40_RS06865 (AK40_619) - 599464..600399 (+) 936 WP_000877933.1 aldo/keto reductase -
  AK40_RS06870 (AK40_620) - 600448..601623 (+) 1176 WP_000832302.1 MFS transporter -
  AK40_RS06875 (AK40_621) - 601812..602036 (-) 225 WP_000162601.1 hypothetical protein -
  AK40_RS06880 (AK40_622) - 602121..602468 (-) 348 WP_000426313.1 DUF4257 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10645.40 Da        Isoelectric Point: 6.3179

>NTDB_id=130881 AK40_RS06850 WP_000648331.1 597495..597782(+) (abrB) [Bacillus cereus 03BB108]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSNQNISLANGNITVSIDGAK
YLIKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=130881 AK40_RS06850 WP_000648331.1 597495..597782(+) (abrB) [Bacillus cereus 03BB108]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATTCCTAAAGAATTACGTGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTCGTAGAAGAAGACAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAAATCAAAACATATCATTAGCAAATGGAAACATTACTGTTAGTATAGATGGAGCGAAA
TATTTAATAAAAGAAATAGAGAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.444

94.737

0.516

Multiple sequence alignment