Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   AK36_RS15455 Genome accession   NZ_CP009631
Coordinates   1196564..1198069 (-) Length   501 a.a.
NCBI ID   WP_045578772.1    Uniprot ID   -
Organism   Burkholderia vietnamiensis LMG 10929     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1191564..1203069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AK36_RS15430 (AK36_1103) - 1192591..1193229 (-) 639 WP_011886060.1 LON peptidase substrate-binding domain-containing protein -
  AK36_RS15435 (AK36_1104) rapZ 1193257..1194165 (-) 909 WP_034192566.1 RNase adapter RapZ -
  AK36_RS15440 (AK36_1105) hprK 1194241..1195209 (-) 969 WP_006483133.1 HPr(Ser) kinase/phosphatase -
  AK36_RS15445 (AK36_1106) - 1195339..1195851 (-) 513 WP_011886058.1 PTS sugar transporter subunit IIA -
  AK36_RS15450 (AK36_1107) hpf 1196046..1196405 (-) 360 WP_011886057.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  AK36_RS15455 (AK36_1108) rpoN/rpoN1 1196564..1198069 (-) 1506 WP_045578772.1 RNA polymerase factor sigma-54 Machinery gene
  AK36_RS15460 (AK36_1109) lptB 1198232..1199008 (-) 777 WP_011886055.1 LPS export ABC transporter ATP-binding protein -
  AK36_RS15465 (AK36_1110) lptA 1199005..1199670 (-) 666 WP_011886054.1 lipopolysaccharide transport periplasmic protein LptA -
  AK36_RS15470 (AK36_1111) lptC 1199691..1200305 (-) 615 WP_011886053.1 LPS export ABC transporter periplasmic protein LptC -
  AK36_RS15475 (AK36_1112) - 1200309..1200845 (-) 537 WP_011886052.1 KdsC family phosphatase -
  AK36_RS15480 (AK36_1113) kdsD 1200845..1201828 (-) 984 WP_014723665.1 arabinose 5-phosphate isomerase KdsD -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 54828.98 Da        Isoelectric Point: 4.8247

>NTDB_id=130857 AK36_RS15455 WP_045578772.1 1196564..1198069(-) (rpoN/rpoN1) [Burkholderia vietnamiensis LMG 10929]
MKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVAMAVAQNPLLESDDEWIASPLRVAADGSLIAQTPPAPNGESGS
MNGSGQSSERAERDEPAATDEYDGYGSGDTSDGPQWNLDEFGRSSGASDDDDLPPLQVQEAATSLREHLSAQLRVTQASP
RDRALVMFLIESLDDDGYLTASLDEVLADLPPELEVDCDELNAALALLHSFDPAGVGARSASECLKLQLLRLDPSPTRTL
ALEIVSQHLELLAARDFTRLRKQLKASDDALRDAHALIRSLEPFPGAAYGKAEADYVVPDIIVKKAGQGWLAELNPEVMP
RLRINNLYANILRNSRGDPSTGSLKQQLQEARWLIKNIQQRFDTILRVAQAIVERQKNFFAHGEIAMRPLVLREIADTLG
LHESTVSRVTTGKYMLTPFGTLEFKYFFGSHVSTDTGGAASSTAIRALIKQLIGAEDPKSPLSDSRIAELLAEQGFVVAR
RTVAKYREALRIPAVNLRKSL

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=130857 AK36_RS15455 WP_045578772.1 1196564..1198069(-) (rpoN/rpoN1) [Burkholderia vietnamiensis LMG 10929]
ATGAAAGCCAGCCTCCAACTCCGCCTGTCGCAACACCTTGCGTTGACGCCGCAGCTGCAGCAGTCGATTCGGCTTTTGCA
GCTGTCGACGCTCGAGCTGCAGCAGGAAGTCGCGATGGCCGTCGCGCAGAATCCGCTGCTGGAAAGCGACGACGAATGGA
TCGCGAGCCCGCTGCGCGTCGCAGCCGACGGATCGCTGATCGCGCAGACGCCGCCCGCCCCGAACGGCGAGTCCGGCAGC
ATGAACGGCAGCGGCCAGTCGAGCGAGCGCGCCGAACGCGACGAGCCGGCCGCCACCGACGAATACGACGGCTATGGCTC
GGGCGACACGAGCGACGGCCCGCAATGGAATCTCGACGAATTCGGCCGCTCGAGCGGCGCGTCGGACGACGACGATCTCC
CGCCGCTGCAGGTCCAGGAAGCCGCCACATCGCTGCGCGAGCATCTGTCCGCGCAGCTGCGCGTCACGCAGGCCAGCCCG
CGCGATCGCGCGCTCGTGATGTTCCTGATCGAATCGCTCGACGACGACGGCTACCTGACCGCGTCGCTCGACGAAGTGCT
GGCCGACCTGCCGCCCGAACTGGAAGTCGACTGCGACGAGCTGAATGCGGCGCTCGCGCTGCTGCACAGCTTCGATCCGG
CCGGCGTCGGCGCGCGCTCGGCGTCCGAATGCCTGAAGCTGCAACTGCTGCGGCTCGATCCGTCCCCGACCCGCACGCTC
GCGCTGGAAATCGTCTCGCAGCATCTCGAGCTGCTCGCCGCGCGCGACTTCACGCGGCTGCGCAAGCAACTGAAGGCGAG
CGACGACGCGCTGCGCGACGCGCACGCGCTGATCCGCTCGCTGGAGCCGTTCCCGGGCGCGGCCTACGGCAAGGCCGAGG
CCGACTACGTGGTGCCCGACATCATCGTGAAGAAGGCCGGCCAGGGCTGGCTCGCGGAGCTCAATCCGGAGGTGATGCCG
CGCCTGCGGATCAACAACCTGTACGCGAACATTCTGCGCAACAGCCGCGGCGATCCGTCGACCGGATCGTTGAAGCAACA
GCTGCAGGAAGCACGCTGGCTGATCAAGAATATCCAGCAGCGATTCGACACGATCCTGCGTGTCGCGCAGGCTATTGTCG
AACGTCAGAAGAACTTCTTTGCGCACGGCGAAATTGCCATGCGCCCCTTGGTTTTGCGGGAAATAGCTGATACGCTGGGC
CTACACGAGTCGACTGTCAGCCGTGTGACAACCGGTAAGTACATGCTGACCCCGTTCGGGACGCTGGAGTTCAAGTACTT
CTTCGGATCGCACGTTTCGACCGACACCGGAGGCGCCGCATCGTCGACCGCCATCCGAGCCCTGATCAAGCAACTGATAG
GAGCTGAAGACCCAAAGTCGCCACTTTCGGACAGCCGCATTGCCGAGCTGCTGGCAGAACAGGGATTCGTGGTCGCGCGC
CGCACGGTCGCGAAGTATCGCGAAGCCCTCAGGATCCCGGCAGTGAATCTGCGCAAATCTCTTTAA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(137-328)

Sigma-54, DNA binding domain (Sigma54_DBD)

(344-499)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

67.836

100

0.695

Multiple sequence alignment