Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   VT05_RS10270 Genome accession   NZ_CP012026
Coordinates   1895654..1896160 (+) Length   168 a.a.
NCBI ID   WP_003687075.1    Uniprot ID   Q5F534
Organism   Neisseria gonorrhoeae strain FA19     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1890654..1901160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VT05_RS10235 (VT05_01948) - 1891093..1892628 (+) 1536 WP_025456085.1 sodium-dependent transporter -
  VT05_RS13500 (VT05_01949) - 1892625..1892717 (+) 93 WP_010356218.1 methionine/alanine import family NSS transporter small subunit -
  VT05_RS10245 (VT05_01950) - 1892769..1893191 (-) 423 WP_003687065.1 toxin-antitoxin system YwqK family antitoxin -
  VT05_RS10250 (VT05_01951) lysA 1893385..1894605 (-) 1221 WP_003690402.1 diaminopimelate decarboxylase -
  VT05_RS10255 (VT05_01952) lptM 1894616..1894786 (-) 171 WP_003687071.1 LPS translocon maturation chaperone LptM -
  VT05_RS10260 (VT05_01953) cyaY 1894857..1895180 (+) 324 WP_002226758.1 iron donor protein CyaY -
  VT05_RS10265 (VT05_01954) - 1895213..1895632 (+) 420 WP_003687072.1 DUF2251 domain-containing protein -
  VT05_RS10270 (VT05_01955) luxS 1895654..1896160 (+) 507 WP_003687075.1 S-ribosylhomocysteine lyase Regulator
  VT05_RS10275 (VT05_01956) polA 1896305..1899097 (+) 2793 WP_003687077.1 DNA polymerase I -
  VT05_RS10280 (VT05_01957) - 1899659..1900354 (+) 696 WP_003687079.1 Fic family protein -
  VT05_RS15510 - 1900346..1900456 (-) 111 Protein_1933 IS5/IS1182 family transposase -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18623.45 Da        Isoelectric Point: 5.9060

>NTDB_id=130817 VT05_RS10270 WP_003687075.1 1895654..1896160(+) (luxS) [Neisseria gonorrhoeae strain FA19]
MPLLDSFKVDHTRMHAPAVRVAKTMTTPKGDTITVFDLRFCIPNKEILPEKGIHTLEHLFAGFMRDHLNGAGVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMQDVLNVKDQSKIPELNEYQCGTYLMHSLAEAQQIAQNVLARKVAVNRNGDLA
LDESLLNA

Nucleotide


Download         Length: 507 bp        

>NTDB_id=130817 VT05_RS10270 WP_003687075.1 1895654..1896160(+) (luxS) [Neisseria gonorrhoeae strain FA19]
ATGCCCCTGTTAGACAGTTTCAAAGTCGATCACACCCGTATGCACGCCCCTGCCGTACGCGTGGCGAAAACCATGACCAC
GCCCAAAGGCGACACCATTACTGTATTCGACCTGCGCTTTTGCATCCCCAATAAAGAAATCCTGCCCGAAAAAGGCATCC
ACACGCTGGAGCATTTGTTTGCCGGCTTTATGCGCGACCACTTGAACGGCGCCGGCGTGGAAATCATCGACATTTCCCCG
ATGGGCTGCCGCACCGGTTTTTATATGAGCCTTATCGGCACGCCTTCCGAACAGCAGGTTGCCGATGCGTGGTTGGCTTC
GATGCAGGATGTTTTGAATGTCAAAGACCAAAGTAAAATCCCCGAGTTGAACGAATACCAATGCGGCACTTATCTGATGC
ACTCGCTCGCCGAAGCGCAACAAATCGCGCAAAACGTGTTGGCGCGCAAAGTGGCGGTTAACCGAAACGGCGATTTGGCT
TTGGATGAAAGCCTGCTGAACGCTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5F534

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

78.443

99.405

0.78

Multiple sequence alignment