Detailed information
Bioinformatically predicted
Overview
| Name | radA | Type | Machinery gene |
| Locus tag | PKOR_RS06195 | Genome accession | NZ_CP009621 |
| Coordinates | 1472357..1473736 (-) | Length | 459 a.a. |
| NCBI ID | WP_046309743.1 | Uniprot ID | A0A0E3UVU7 |
| Organism | Pontibacter korlensis strain X14-1T | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1467357..1478736
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PKOR_RS06180 (PKOR_06175) | - | 1468212..1469234 (-) | 1023 | WP_046314160.1 | SPASM domain-containing protein | - |
| PKOR_RS06185 (PKOR_06180) | - | 1469352..1470542 (-) | 1191 | WP_046314162.1 | hypothetical protein | - |
| PKOR_RS25825 | - | 1470608..1470739 (+) | 132 | WP_262501850.1 | hypothetical protein | - |
| PKOR_RS06190 (PKOR_06185) | - | 1470754..1472169 (-) | 1416 | WP_046309742.1 | peroxiredoxin family protein | - |
| PKOR_RS06195 (PKOR_06190) | radA | 1472357..1473736 (-) | 1380 | WP_046309743.1 | DNA repair protein RadA | Machinery gene |
| PKOR_RS06200 (PKOR_06195) | - | 1473997..1476915 (-) | 2919 | WP_046309745.1 | CHASE domain-containing protein | - |
| PKOR_RS06210 (PKOR_06205) | - | 1477698..1478414 (+) | 717 | WP_046309747.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 459 a.a. Molecular weight: 50252.60 Da Isoelectric Point: 6.0921
>NTDB_id=130805 PKOR_RS06195 WP_046309743.1 1472357..1473736(-) (radA) [Pontibacter korlensis strain X14-1T]
MAKIKTSYFCQNCGAQSAKWIGKCPACGEWNTYVEEVVQREEVTPTTAWKVGSSTAQVANKPKPIADIRYQEQQRIITQD
QELNRVLGGGIVPGSMVLIGGEPGIGKSTLMLQIALSLRGLKVLYVSGEESEQQIKMRAERLMAQTSDCFILTETGTQNI
FKQIELVRPQVLIIDSIQTLHSSFIEAGAGSVSQVRECTAELLKFAKESGTPVFLIGHITKEGNLAGPKILEHMVDTVLQ
FEGDRHMTYRILRTTKNRFGSTSELGIYEMMGSGLREVSNPSEILISQREDAFSGISIGATLEGNRPLLIEVQSLVSPAT
YGTPQRTSTGFDAKRLNMLLAVLEKRGGYRLGTQDVFLNIAGGLKVEDPALDLAVCASILSSFEDMSIPNTSCFAAEVGL
GGEVRAVNRVENRITEAEKLGFTDIYISKYNKKGVDLSKFSINIHAYGRLEEVFSSLFG
MAKIKTSYFCQNCGAQSAKWIGKCPACGEWNTYVEEVVQREEVTPTTAWKVGSSTAQVANKPKPIADIRYQEQQRIITQD
QELNRVLGGGIVPGSMVLIGGEPGIGKSTLMLQIALSLRGLKVLYVSGEESEQQIKMRAERLMAQTSDCFILTETGTQNI
FKQIELVRPQVLIIDSIQTLHSSFIEAGAGSVSQVRECTAELLKFAKESGTPVFLIGHITKEGNLAGPKILEHMVDTVLQ
FEGDRHMTYRILRTTKNRFGSTSELGIYEMMGSGLREVSNPSEILISQREDAFSGISIGATLEGNRPLLIEVQSLVSPAT
YGTPQRTSTGFDAKRLNMLLAVLEKRGGYRLGTQDVFLNIAGGLKVEDPALDLAVCASILSSFEDMSIPNTSCFAAEVGL
GGEVRAVNRVENRITEAEKLGFTDIYISKYNKKGVDLSKFSINIHAYGRLEEVFSSLFG
Nucleotide
Download Length: 1380 bp
>NTDB_id=130805 PKOR_RS06195 WP_046309743.1 1472357..1473736(-) (radA) [Pontibacter korlensis strain X14-1T]
ATGGCTAAAATAAAGACATCATACTTCTGCCAGAATTGCGGGGCCCAATCTGCCAAATGGATAGGCAAATGCCCGGCATG
CGGCGAGTGGAATACTTATGTTGAGGAGGTAGTGCAGCGCGAGGAGGTTACTCCTACCACAGCCTGGAAAGTAGGCAGCA
GCACAGCACAAGTAGCTAATAAGCCCAAGCCTATTGCCGATATCAGGTATCAGGAGCAGCAACGCATCATTACGCAAGAC
CAGGAACTGAATCGTGTGTTGGGAGGTGGCATTGTGCCGGGTTCTATGGTATTGATAGGTGGTGAGCCGGGTATCGGTAA
AAGTACGCTGATGCTGCAGATTGCCTTGAGCCTGCGTGGCCTGAAGGTGCTATATGTAAGCGGCGAGGAGAGTGAACAGC
AAATAAAAATGCGTGCCGAGCGCCTGATGGCGCAAACCTCCGACTGCTTTATACTTACAGAAACCGGCACTCAGAACATA
TTCAAACAAATAGAGCTTGTGCGCCCACAAGTGCTTATCATAGACTCTATTCAGACGCTCCACTCCTCTTTTATCGAGGC
AGGCGCGGGCAGCGTGAGTCAGGTGCGCGAGTGTACGGCTGAGCTGCTTAAGTTCGCTAAAGAGAGTGGTACGCCGGTGT
TCCTGATCGGCCACATCACCAAAGAAGGGAACTTGGCTGGCCCTAAAATACTAGAGCACATGGTAGACACAGTGCTGCAG
TTTGAAGGTGATCGCCACATGACCTACCGCATCTTGCGCACCACTAAAAACCGCTTTGGCTCTACATCTGAACTGGGAAT
CTATGAGATGATGGGTTCTGGCCTGCGCGAGGTGAGTAATCCATCAGAAATCCTGATTTCGCAGCGCGAGGATGCTTTTA
GCGGTATCTCGATAGGTGCTACCCTGGAAGGCAACCGCCCACTGTTAATTGAGGTGCAGAGCCTGGTAAGCCCTGCTACC
TATGGTACACCACAGCGCACCAGCACTGGCTTTGATGCTAAGCGATTGAACATGCTGTTGGCGGTGCTGGAGAAGCGAGG
CGGCTATCGCTTAGGTACCCAAGACGTGTTCCTGAACATTGCCGGCGGTCTGAAGGTAGAAGATCCTGCCCTGGATCTGG
CTGTTTGCGCCTCCATCCTGTCTTCTTTCGAGGATATGTCTATTCCGAATACCTCCTGCTTTGCTGCCGAGGTAGGCTTG
GGAGGTGAAGTACGCGCCGTAAACAGGGTAGAAAACCGCATCACCGAAGCAGAGAAGTTAGGCTTTACTGACATTTACAT
CTCTAAGTATAATAAGAAGGGTGTAGACCTAAGTAAGTTCTCCATCAACATACATGCTTATGGTCGCTTAGAAGAAGTAT
TCAGTAGCCTGTTTGGGTAG
ATGGCTAAAATAAAGACATCATACTTCTGCCAGAATTGCGGGGCCCAATCTGCCAAATGGATAGGCAAATGCCCGGCATG
CGGCGAGTGGAATACTTATGTTGAGGAGGTAGTGCAGCGCGAGGAGGTTACTCCTACCACAGCCTGGAAAGTAGGCAGCA
GCACAGCACAAGTAGCTAATAAGCCCAAGCCTATTGCCGATATCAGGTATCAGGAGCAGCAACGCATCATTACGCAAGAC
CAGGAACTGAATCGTGTGTTGGGAGGTGGCATTGTGCCGGGTTCTATGGTATTGATAGGTGGTGAGCCGGGTATCGGTAA
AAGTACGCTGATGCTGCAGATTGCCTTGAGCCTGCGTGGCCTGAAGGTGCTATATGTAAGCGGCGAGGAGAGTGAACAGC
AAATAAAAATGCGTGCCGAGCGCCTGATGGCGCAAACCTCCGACTGCTTTATACTTACAGAAACCGGCACTCAGAACATA
TTCAAACAAATAGAGCTTGTGCGCCCACAAGTGCTTATCATAGACTCTATTCAGACGCTCCACTCCTCTTTTATCGAGGC
AGGCGCGGGCAGCGTGAGTCAGGTGCGCGAGTGTACGGCTGAGCTGCTTAAGTTCGCTAAAGAGAGTGGTACGCCGGTGT
TCCTGATCGGCCACATCACCAAAGAAGGGAACTTGGCTGGCCCTAAAATACTAGAGCACATGGTAGACACAGTGCTGCAG
TTTGAAGGTGATCGCCACATGACCTACCGCATCTTGCGCACCACTAAAAACCGCTTTGGCTCTACATCTGAACTGGGAAT
CTATGAGATGATGGGTTCTGGCCTGCGCGAGGTGAGTAATCCATCAGAAATCCTGATTTCGCAGCGCGAGGATGCTTTTA
GCGGTATCTCGATAGGTGCTACCCTGGAAGGCAACCGCCCACTGTTAATTGAGGTGCAGAGCCTGGTAAGCCCTGCTACC
TATGGTACACCACAGCGCACCAGCACTGGCTTTGATGCTAAGCGATTGAACATGCTGTTGGCGGTGCTGGAGAAGCGAGG
CGGCTATCGCTTAGGTACCCAAGACGTGTTCCTGAACATTGCCGGCGGTCTGAAGGTAGAAGATCCTGCCCTGGATCTGG
CTGTTTGCGCCTCCATCCTGTCTTCTTTCGAGGATATGTCTATTCCGAATACCTCCTGCTTTGCTGCCGAGGTAGGCTTG
GGAGGTGAAGTACGCGCCGTAAACAGGGTAGAAAACCGCATCACCGAAGCAGAGAAGTTAGGCTTTACTGACATTTACAT
CTCTAAGTATAATAAGAAGGGTGTAGACCTAAGTAAGTTCTCCATCAACATACATGCTTATGGTCGCTTAGAAGAAGTAT
TCAGTAGCCTGTTTGGGTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radA | Streptococcus pneumoniae R6 |
50.87 |
100 |
0.51 |
| radA | Streptococcus pneumoniae Rx1 |
50.87 |
100 |
0.51 |
| radA | Streptococcus pneumoniae D39 |
50.87 |
100 |
0.51 |
| radA | Streptococcus pneumoniae TIGR4 |
50.87 |
100 |
0.51 |
| radA | Streptococcus mitis NCTC 12261 |
50.652 |
100 |
0.508 |
| radA | Streptococcus mitis SK321 |
50.435 |
100 |
0.505 |
| radA | Bacillus subtilis subsp. subtilis str. 168 |
52.752 |
94.989 |
0.501 |