Detailed information NTG0130783

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: IX92_RS12995
• Genome accession: NZ_CP009617
• Coordinates: 2826309..2827292 (-)
• Length: 327 a.a.
• NCBI ID: WP_006958149.1
• Uniprot ID: A0A097AVA5
• Organism: Vibrio coralliilyticus strain RE98
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2821309..2832292

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IX92_RS12970 (IX92_12970)	rimM	2821418..2821966 (-)	549	WP_031343344.1	ribosome maturation factor RimM	-
IX92_RS12975 (IX92_12975)	rpsP	2821996..2822244 (-)	249	WP_005438039.1	30S ribosomal protein S16	-
IX92_RS12980 (IX92_12980)	ffh	2822453..2823844 (-)	1392	WP_043009239.1	signal recognition particle protein	-
IX92_RS12985 (IX92_12985)	-	2824050..2824844 (+)	795	WP_043009241.1	inner membrane protein YpjD	-
IX92_RS12990 (IX92_12990)	-	2824967..2826241 (+)	1275	WP_006958148.1	CNNM domain-containing protein	-
IX92_RS12995 (IX92_12995)	rpoS	2826309..2827292 (-)	984	WP_006958149.1	RNA polymerase sigma factor RpoS	Regulator
IX92_RS13000 (IX92_13000)	nlpD	2827359..2828270 (-)	912	WP_043009243.1	murein hydrolase activator NlpD	-
IX92_RS13005 (IX92_13005)	-	2828273..2828899 (-)	627	WP_038164045.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
IX92_RS13010 (IX92_13010)	surE	2828902..2829645 (-)	744	WP_171346503.1	5'/3'-nucleotidase SurE	-
IX92_RS13015 (IX92_13015)	truD	2829657..2830703 (-)	1047	WP_043009248.1	tRNA pseudouridine(13) synthase TruD	-
IX92_RS13020 (IX92_13020)	ispF	2830750..2831229 (-)	480	WP_043009250.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
IX92_RS13025 (IX92_13025)	ispD	2831233..2831937 (-)	705	WP_043009251.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
IX92_RS13030 (IX92_13030)	ftsB	2831940..2832218 (-)	279	WP_019277512.1	cell division protein FtsB	-

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 37396.39 Da
• Isoelectric Point: 4.7232

>NTDB_id=130783 IX92_RS12995 WP_006958149.1 2826309..2827292(-) (rpoS) [Vibrio coralliilyticus strain RE98]
MSISNTATKVEEFELEPTMESIQANGLTTANRTQAEDAKEEFDASTKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIATQLDKPVDDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDVNNSDP
EVSTQDDDIKSSLIHWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILIKQGLNMES
LFSMNEE

Nucleotide

• Length: 984 bp

>NTDB_id=130783 IX92_RS12995 WP_006958149.1 2826309..2827292(-) (rpoS) [Vibrio coralliilyticus strain RE98]
ATGAGTATCAGCAATACAGCAACGAAAGTCGAAGAGTTCGAGCTTGAACCAACAATGGAATCGATTCAGGCAAACGGGCT
TACTACCGCCAACCGCACCCAAGCAGAGGACGCCAAAGAGGAGTTTGACGCTTCCACAAAAAGCTTGGATGCCACTCAAC
TTTACTTGGGAGAAATTGGTTTCTCTCCACTACTCACCGCAGAAGAAGAAGTTTTGTACGCTCGCCGTGCCCTAAGAGGT
GATGAAGCTGCGCGTAAACGAATGATTGAAAGTAATCTTCGCTTAGTGGTGAAAATTTCCCGTCGATACAGCAACCGTGG
GCTTGCTCTGCTTGATCTGATTGAAGAAGGCAACTTAGGCTTGATTCGCGCGGTTGAAAAGTTTGACCCAGAGAGAGGGT
TCCGATTCTCGACCTATGCTACATGGTGGATCCGCCAAACGATTGAACGTGCTTTGATGAATCAAACTCGCACCATACGT
TTGCCTATTCATGTGGTCAAGGAACTGAACATCTATCTGCGTACTGCTCGTGAGTTATCACAGAAGCTGGACCATGAACC
GACGGCAGAAGAGATTGCTACACAACTCGATAAGCCAGTCGACGATGTCAGCAAGATGCTACGCCTTAACGAACGCATTA
GTTCTGTAGACACCCCTATAGGTGGTGATGGTGAAAAAGCACTGCTGGATATTATTCCTGATGTGAACAACTCTGACCCT
GAAGTGTCCACACAAGACGATGATATCAAATCTTCATTGATCCATTGGTTGGATGAACTGAATCCTAAGCAGAAAGAAGT
CTTAGCCCGTCGTTTTGGATTATTGGGCTACGAGCCGTCAACACTGGAAGAAGTAGGACGTGAAATTAACCTAACTCGTG
AACGTGTTCGTCAGATTCAGGTTGAAGGCCTACGCCGTTTAAGAGAGATCCTGATCAAACAAGGTCTGAACATGGAAAGC
CTGTTCAGCATGAACGAAGAATAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (168-241)

• Sigma-70 region 2 (Sigma70_r2) (88-157)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (50-83)

• Sigma-70, region 4 (Sigma70_r4) (256-309)

3D structure

• AlphaFold DB: A0A097AVA5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.988	100	0.85