Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   IX92_RS07815 Genome accession   NZ_CP009617
Coordinates   1711049..1712536 (+) Length   495 a.a.
NCBI ID   WP_043008172.1    Uniprot ID   A0AAN0SBZ0
Organism   Vibrio coralliilyticus strain RE98     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1706049..1717536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IX92_RS07800 (IX92_07800) - 1707199..1707894 (+) 696 WP_043008167.1 chromosome partitioning protein ParA -
  IX92_RS07805 (IX92_07805) - 1707904..1708704 (+) 801 WP_043008169.1 phosphate/phosphite/phosphonate ABC transporter substrate-binding protein -
  IX92_RS07810 (IX92_07810) - 1708727..1711027 (+) 2301 WP_043008170.1 response regulator -
  IX92_RS07815 (IX92_07815) luxO 1711049..1712536 (+) 1488 WP_043008172.1 sigma-54 dependent transcriptional regulator Regulator
  IX92_RS07820 (IX92_07820) - 1712514..1713581 (+) 1068 WP_043008175.1 glycosyltransferase family 4 protein -
  IX92_RS07825 (IX92_07825) - 1713681..1714883 (+) 1203 WP_038159125.1 glycosyltransferase -
  IX92_RS07830 (IX92_07830) - 1714876..1716072 (+) 1197 WP_043008177.1 glycosyltransferase -
  IX92_RS07835 (IX92_07835) - 1716083..1717534 (+) 1452 WP_043008179.1 membrane protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 55162.05 Da        Isoelectric Point: 5.6681

>NTDB_id=130774 IX92_RS07815 WP_043008172.1 1711049..1712536(+) (luxO) [Vibrio coralliilyticus strain RE98]
MRAKVLLIEDSTSLAVLYKQYVKDEAFDLFHVETGRDAKAFIERNVPQLVILDLKLPDMNGEDILDWINENQVPTSVVVA
TAHGSVDIAVSLLQKGAKDFLEKPIQADRLKTSINLHLQQAKLEHLVEDIEAKFDRNRFHGFIGSCLPMQGVYKIIDSVA
PTTASVFIIGESGTGKEVCAEAIHKESKRNDKPFIAINCGAIPKDLMESEIFGHVKGAFTGATTDRKGAASLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTFTPLGGSKEMKVDVRIICATNRDPLLEVEEGRFREDLYYRVHVVPIEMPPLRERGNDI
TTLATHFLKLFAKEDGKKFNGINRDAESLLKHYSWPGNVRQLQNVIRNIVVLNDESKLSVAHLPDQISKSNKSAKPRAAQ
AAIRYEAPAQASPVEAVDMALQASTPVIESVNTQSSTPVTIRPMWQVERETIQQAIDFCNGNVLNAAVLLELSPSTVYRK
KQAWEAEEDEQQYAD

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=130774 IX92_RS07815 WP_043008172.1 1711049..1712536(+) (luxO) [Vibrio coralliilyticus strain RE98]
ATGAGAGCAAAAGTACTACTGATTGAAGACTCCACATCTCTGGCAGTCCTTTACAAACAGTACGTAAAAGATGAAGCGTT
TGACCTGTTTCATGTTGAAACAGGTCGTGATGCCAAAGCATTCATAGAACGAAACGTACCACAACTTGTGATTTTAGATC
TCAAGCTTCCGGACATGAACGGCGAAGATATCCTGGACTGGATCAACGAGAATCAAGTACCAACCTCCGTCGTCGTTGCA
ACCGCACACGGTTCCGTGGATATCGCGGTAAGCTTGCTTCAGAAAGGGGCTAAAGACTTTCTCGAAAAGCCGATTCAGGC
AGACCGACTCAAAACGTCGATAAACCTCCACTTACAGCAAGCTAAACTCGAACACTTAGTCGAAGATATCGAAGCGAAAT
TCGACAGAAATCGCTTCCATGGATTCATCGGCTCTTGTCTACCTATGCAGGGCGTATACAAAATCATCGACTCTGTTGCG
CCAACAACAGCGAGTGTCTTCATCATTGGAGAAAGCGGCACCGGTAAAGAAGTATGCGCAGAAGCAATTCACAAAGAAAG
TAAACGAAACGATAAACCTTTTATCGCCATCAACTGTGGTGCTATTCCTAAAGATCTTATGGAAAGCGAAATTTTTGGCC
ATGTAAAAGGTGCATTCACAGGGGCGACTACGGACAGAAAAGGCGCGGCATCTTTAGCTCATGGAGGAACGCTCTTCCTT
GACGAGTTATGTGAGATGGAGCTGGAAATGCAGAAGAAACTGCTACGTTTCCTGCAGACAGGTACTTTCACCCCACTCGG
AGGCTCGAAAGAAATGAAGGTCGATGTGCGGATAATCTGCGCAACCAATCGTGACCCATTGCTAGAAGTTGAAGAAGGCC
GATTCCGAGAAGACTTGTACTACCGCGTTCATGTTGTGCCGATTGAGATGCCTCCTTTGAGAGAGCGTGGGAATGACATC
ACAACGCTAGCGACTCATTTCCTTAAGCTGTTCGCTAAAGAAGACGGTAAGAAGTTCAATGGTATCAACCGAGACGCTGA
ATCTTTGCTCAAGCACTACTCCTGGCCCGGTAATGTGAGACAGCTGCAAAATGTCATTCGCAATATAGTTGTTCTCAACG
ACGAATCAAAGCTCTCTGTCGCTCACCTACCTGATCAGATTTCAAAAAGTAATAAATCGGCTAAGCCCAGAGCAGCCCAA
GCAGCAATCCGCTATGAAGCTCCTGCTCAAGCGTCACCAGTAGAAGCGGTGGATATGGCATTACAAGCATCAACTCCAGT
GATTGAGAGTGTTAACACACAAAGTTCTACGCCGGTAACAATACGTCCAATGTGGCAGGTAGAGAGAGAAACCATTCAAC
AAGCCATTGATTTTTGCAATGGTAATGTCCTCAACGCAGCGGTGTTACTCGAGTTGAGTCCATCAACCGTTTATCGTAAA
AAACAGGCTTGGGAAGCCGAAGAAGATGAGCAGCAATACGCGGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-114)

Sigma-54 interaction domain (Sigma54_activat)

(144-309)

Bacterial regulatory protein, Fis family (HTH_8)

(444-480)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.896

96.768

0.483

Multiple sequence alignment