Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   IX92_RS06255 Genome accession   NZ_CP009617
Coordinates   1372302..1373726 (-) Length   474 a.a.
NCBI ID   WP_043007795.1    Uniprot ID   A0AAN0SCR1
Organism   Vibrio coralliilyticus strain RE98     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1367302..1378726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IX92_RS06235 (IX92_06235) - 1368716..1369918 (+) 1203 WP_031343039.1 HD-GYP domain-containing protein -
  IX92_RS06240 (IX92_06240) cdd 1369974..1370861 (-) 888 WP_043007793.1 cytidine deaminase -
  IX92_RS06245 (IX92_06245) - 1371115..1371792 (-) 678 WP_006962033.1 CidB/LrgB family autolysis modulator -
  IX92_RS06250 (IX92_06250) - 1371792..1372157 (-) 366 WP_006962035.1 CidA/LrgA family protein -
  IX92_RS06255 (IX92_06255) sbcB 1372302..1373726 (-) 1425 WP_043007795.1 exodeoxyribonuclease I Machinery gene
  IX92_RS06260 (IX92_06260) - 1374374..1374724 (+) 351 WP_043007798.1 hypothetical protein -
  IX92_RS06265 (IX92_06265) - 1375033..1375359 (+) 327 WP_043007799.1 hypothetical protein -
  IX92_RS06270 (IX92_06270) - 1375903..1376379 (+) 477 WP_043007801.1 hypothetical protein -
  IX92_RS06275 (IX92_06275) - 1376372..1377496 (+) 1125 WP_043007803.1 hypothetical protein -
  IX92_RS06280 (IX92_06280) - 1377627..1377947 (+) 321 WP_043007805.1 hypothetical protein -
  IX92_RS06285 (IX92_06285) - 1378111..1378452 (+) 342 WP_043007807.1 hypothetical protein -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54641.90 Da        Isoelectric Point: 5.0198

>NTDB_id=130773 IX92_RS06255 WP_043007795.1 1372302..1373726(-) (sbcB) [Vibrio coralliilyticus strain RE98]
MQQAHQPTFFFFDYETWGTSPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQPPSDYLPSPEAALITGITPQTAASKGLPEP
EFIAKIHEQLSTPNTINLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGVNWPENEEGFI
SFKLEHLSVANGIEHENAHDAMADVIATIEMAKKVKAAQPKLFDYFLSMRHKRKLNELVDIVNMTPLMHVSGMLGRECNY
TSWVVPVAWHPTNQNAVIVVDLAKDPQPLLDLDVEQLNERLYTKHSELGPDELPVPIKLVHLNKCPILAPAKTLTAENAA
NIGIDREKCLQNLERLRQHPEIREKLNSLYSIEREYEKSDDVDTMLYDGFFSPAAKQSMDIIRETEPKNLSALDISFSDD
RIAPLLFRYRARHFPWTLDESEQQKWAAHSREYFESRIEDYMLNLENLVHEHESDEKKIAILKSVYQYVQKLVS

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=130773 IX92_RS06255 WP_043007795.1 1372302..1373726(-) (sbcB) [Vibrio coralliilyticus strain RE98]
ATGCAACAAGCGCATCAACCTACGTTTTTCTTTTTTGATTATGAAACGTGGGGAACCAGCCCAGCAAAGGACAGACCGTC
CCAGTTTGCGGGTGTACGCACCGACATGGATTTCAATATCATCGGTGAGCCTCTTGTTATCTACTGCCAACCACCTTCAG
ATTATCTTCCATCACCCGAAGCCGCGCTTATCACTGGTATCACACCTCAGACGGCGGCAAGTAAAGGGTTACCTGAGCCG
GAATTTATTGCCAAAATTCATGAGCAGTTGTCCACGCCAAACACCATCAACTTAGGTTACAACAGCATTCGATTTGATGA
CGAAGTAACGCGATACACCTGCTATCGAAATTTCATCGATCCGTATGCGTGGAGCTGGCAAAACGGCAACTCTCGCTGGG
ACTTACTTGATGTCATGCGCGCCTGTCACGCCCTTCGCCCAGAAGGTGTTAATTGGCCAGAGAATGAAGAAGGTTTTATC
AGCTTTAAGCTAGAGCACTTATCCGTTGCCAATGGCATTGAGCACGAGAATGCACACGATGCCATGGCTGACGTTATAGC
AACGATTGAAATGGCTAAAAAGGTGAAAGCCGCTCAGCCTAAGCTCTTTGATTATTTCCTTAGCATGCGCCACAAGCGCA
AACTGAACGAACTCGTCGATATCGTGAATATGACACCGCTTATGCACGTATCGGGTATGCTGGGGCGCGAATGCAATTAC
ACTAGCTGGGTGGTTCCGGTCGCTTGGCATCCAACCAACCAGAATGCGGTGATTGTTGTCGATTTAGCGAAAGACCCTCA
GCCGTTGTTGGATTTAGATGTAGAACAACTTAATGAGCGTCTCTACACCAAACATTCTGAACTTGGCCCAGACGAACTGC
CTGTACCAATCAAACTTGTCCATCTCAACAAGTGCCCTATTTTGGCTCCAGCCAAAACATTAACTGCTGAGAATGCAGCT
AACATAGGCATTGACAGAGAAAAATGCTTACAAAACCTTGAGCGACTAAGACAGCACCCTGAGATTAGAGAAAAACTCAA
TTCGCTATACAGTATCGAGAGAGAATACGAAAAGAGCGATGATGTTGATACTATGCTTTACGATGGTTTCTTCTCTCCTG
CGGCAAAGCAATCAATGGATATCATACGAGAAACTGAACCAAAGAATCTTTCCGCCCTTGATATCTCATTCAGTGACGAC
AGAATTGCTCCGCTTCTATTCCGCTATCGCGCCAGACATTTTCCGTGGACATTGGATGAGAGTGAACAACAAAAATGGGC
AGCACACAGCCGCGAATACTTCGAAAGTCGAATAGAAGACTACATGTTGAATTTGGAAAACTTAGTTCACGAGCATGAGA
GTGACGAAAAAAAGATAGCTATCTTAAAATCTGTTTACCAATACGTTCAAAAGCTAGTATCTTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

78.858

99.789

0.787

Multiple sequence alignment