Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   IX92_RS01375 Genome accession   NZ_CP009617
Coordinates   283462..283980 (+) Length   172 a.a.
NCBI ID   WP_006957088.1    Uniprot ID   A0A097QN45
Organism   Vibrio coralliilyticus strain RE98     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 278462..288980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IX92_RS01365 (IX92_01365) gshA 281265..282833 (+) 1569 WP_043009590.1 glutamate--cysteine ligase -
  IX92_RS01370 (IX92_01370) - 282843..283439 (+) 597 WP_043006757.1 hypothetical protein -
  IX92_RS01375 (IX92_01375) luxS 283462..283980 (+) 519 WP_006957088.1 S-ribosylhomocysteine lyase Regulator
  IX92_RS01380 (IX92_01380) - 284026..284502 (-) 477 WP_038164643.1 RDD family protein -
  IX92_RS01390 (IX92_01390) - 284958..286202 (+) 1245 WP_043006759.1 tyrosine-type recombinase/integrase -
  IX92_RS28815 - 286266..287165 (-) 900 Protein_236 IS481 family transposase -
  IX92_RS01400 (IX92_01400) - 287235..288458 (-) 1224 WP_043006761.1 hypothetical protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19051.83 Da        Isoelectric Point: 4.7134

>NTDB_id=130767 IX92_RS01375 WP_006957088.1 283462..283980(+) (luxS) [Vibrio coralliilyticus strain RE98]
MPLLDSFTVDHTRMNAPAVRVAKTMTTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRSHLNGDSVEIIDISP
MGCRTGFYMSLIGTPTEEQVAQSWLSSMQDVLKVESQNKIPELNEYQCGTAAMHSLEEAKQIAQAIIDAGIKVNLNDELA
LPESMLKELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=130767 IX92_RS01375 WP_006957088.1 283462..283980(+) (luxS) [Vibrio coralliilyticus strain RE98]
ATGCCATTATTAGATAGCTTTACTGTGGATCACACTCGCATGAATGCGCCAGCGGTGAGAGTGGCTAAGACAATGACCAC
GCCGAAAGGTGATACTATTACTGTGTTTGACCTGCGTTTTACTGCGCCAAACAAAGACATTCTTTCTGAGAAAGGCATTC
ACACACTGGAACACTTATACGCAGGTTTCATGCGCAGTCACTTAAACGGTGATAGCGTAGAAATTATCGATATTTCACCA
ATGGGCTGCCGTACTGGCTTTTACATGAGCCTGATTGGCACACCAACAGAAGAGCAGGTAGCTCAGTCTTGGTTGTCATC
GATGCAAGATGTGCTAAAAGTTGAAAGCCAAAACAAGATCCCTGAACTAAACGAATATCAATGTGGCACTGCTGCGATGC
ACTCTCTTGAAGAAGCTAAACAGATTGCTCAAGCTATCATTGACGCAGGCATCAAAGTTAACCTCAATGACGAGTTAGCT
TTACCTGAGTCAATGCTTAAAGAGCTGAAAGTCGATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A097QN45

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.719

99.419

0.872

Multiple sequence alignment