Detailed information NTG0130712

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: lpt_RS06140
• Genome accession: NZ_CP012019
• Coordinates: 1380697..1381722 (+)
• Length: 341 a.a.
• NCBI ID: WP_011946339.1
• Uniprot ID: -
• Organism: Legionella pneumophila subsp. pneumophila strain Toronto-20052
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1375697..1386722

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
lpt_RS06110 (lpt_06100)	-	1376129..1376446 (+)	318	WP_010947009.1	DUF2845 domain-containing protein	-
lpt_RS06115 (lpt_06105)	-	1376482..1376853 (+)	372	WP_011213591.1	protease inhibitor I42 family protein	-
lpt_RS06120 (lpt_06110)	-	1376910..1378625 (-)	1716	WP_061513441.1	NAD-dependent malic enzyme	-
lpt_RS06125 (lpt_06115)	-	1378705..1379088 (+)	384	WP_011946336.1	hypothetical protein	-
lpt_RS06130 (lpt_06120)	surE	1379091..1379849 (+)	759	WP_011946337.1	5'/3'-nucleotidase SurE	-
lpt_RS06135 (lpt_06125)	-	1379868..1380611 (+)	744	WP_011213595.1	peptidoglycan DD-metalloendopeptidase family protein	-
lpt_RS06140 (lpt_06130)	rpoS	1380697..1381722 (+)	1026	WP_011946339.1	RNA polymerase sigma factor RpoS	Regulator
lpt_RS06145 (lpt_06135)	hmgA	1381822..1383072 (-)	1251	WP_011946340.1	homogentisate 1,2-dioxygenase	-
lpt_RS06150 (lpt_06140)	-	1383220..1383963 (+)	744	WP_011946341.1	YebC/PmpR family DNA-binding transcriptional regulator	-
lpt_RS06155 (lpt_06145)	ruvC	1383963..1384487 (+)	525	WP_011946342.1	crossover junction endodeoxyribonuclease RuvC	-
lpt_RS06160 (lpt_06150)	ruvA	1384484..1385083 (+)	600	WP_011213600.1	Holliday junction branch migration protein RuvA	-
lpt_RS06165 (lpt_06155)	-	1385135..1385455 (+)	321	WP_011946343.1	hypothetical protein	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 39467.72 Da
• Isoelectric Point: 4.3705

>NTDB_id=130712 lpt_RS06140 WP_011946339.1 1380697..1381722(+) (rpoS) [Legionella pneumophila subsp. pneumophila strain Toronto-20052]
MQDEEEPIKDKEFKEEEWSEPDDDSLLSEEDVEPDIEKMEEDLDEFPEFTDDEVFPSFQRGKNIAKALDATQLYLGEIGF
SPLLTAEEEIHYATLALKGDMEARKKMIESNLRLVVKIARRYLNRGLPLLDLIEEGNLGLMKSVEKFDPKRGFRFSTYAT
WWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARQLTQKLDHEPSPEEIAEMVDKPLEDVQKLLGLNDKVASVDTPIG
FDETKSLLDTIADENSLNPAELLTNENLRQHIESLLDKLTENQQQVIARRFGLRGFEKATLEDVGKEIDLTRERVRQIQV
EALKTLRTLLERVGLTQEDLF

Nucleotide

• Length: 1026 bp

>NTDB_id=130712 lpt_RS06140 WP_011946339.1 1380697..1381722(+) (rpoS) [Legionella pneumophila subsp. pneumophila strain Toronto-20052]
ATGCAAGATGAAGAAGAGCCAATTAAGGACAAGGAATTTAAAGAAGAGGAATGGTCTGAGCCAGATGATGACTCTCTGTT
GTCAGAAGAAGATGTTGAACCTGATATCGAAAAAATGGAAGAAGATCTTGATGAATTTCCAGAGTTTACTGATGATGAAG
TTTTTCCTTCATTTCAGCGCGGGAAAAACATTGCTAAGGCTTTAGATGCGACTCAACTTTACTTGGGTGAAATTGGCTTT
TCTCCTTTGTTAACGGCTGAAGAAGAAATCCATTATGCGACTCTTGCTTTAAAAGGTGATATGGAAGCACGCAAGAAAAT
GATTGAGTCGAATTTGCGCCTGGTGGTTAAAATAGCCAGACGTTATCTTAATAGAGGATTACCTCTTCTGGATCTAATCG
AAGAGGGTAACCTGGGTTTAATGAAGTCTGTTGAGAAATTTGACCCCAAGCGAGGATTCCGTTTTTCAACTTATGCGACC
TGGTGGATTAGGCAAACTATTGAGCGCGCAATTATGAATCAAACGAGAACTATCCGCTTGCCTATTCATGTCGTGAAAGA
ACTTAATGTTTATCTCAGAGCAGCAAGACAATTGACGCAAAAACTGGATCATGAACCATCACCTGAAGAAATAGCAGAAA
TGGTGGATAAGCCTTTGGAGGATGTCCAAAAATTATTGGGATTGAATGATAAAGTGGCTTCAGTTGATACTCCAATTGGA
TTTGATGAAACCAAATCTTTATTAGATACAATTGCTGATGAAAACAGTTTAAATCCTGCAGAGCTGCTAACCAATGAGAA
TTTAAGGCAGCATATAGAATCTCTTCTGGATAAATTAACTGAGAATCAACAGCAGGTTATCGCAAGACGTTTTGGGTTAA
GAGGTTTTGAAAAAGCGACACTGGAAGACGTTGGTAAGGAAATTGATTTGACCCGAGAACGCGTTCGTCAAATTCAAGTT
GAAGCTTTGAAGACACTTAGAACTTTGTTAGAGCGGGTTGGACTAACACAAGAGGATTTGTTTTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (107-176)

• Sigma-70 region 3 (Sigma70_r3) (187-261)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (69-101)

• Sigma-70, region 4 (Sigma70_r4) (275-327)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	67.509	81.232	0.548