Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | NF38_RS03875 | Genome accession | NZ_CP009610 |
| Coordinates | 758453..758902 (+) | Length | 149 a.a. |
| NCBI ID | WP_011271973.1 | Uniprot ID | Q4QNP4 |
| Organism | Haemophilus influenzae strain Hi375 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 753453..763902
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NF38_RS03855 (NF38_03855) | rsmE | 753918..754655 (-) | 738 | WP_038440782.1 | 16S rRNA (uracil(1498)-N(3))-methyltransferase | - |
| NF38_RS03860 (NF38_03860) | lnt | 754708..756234 (-) | 1527 | WP_080291958.1 | apolipoprotein N-acyltransferase | - |
| NF38_RS03865 (NF38_03865) | corC | 756257..757156 (-) | 900 | WP_005656283.1 | CNNM family magnesium/cobalt transport protein CorC | - |
| NF38_RS03870 (NF38_03870) | ampD | 757778..758338 (-) | 561 | WP_011271974.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| NF38_RS03875 (NF38_03875) | pilA | 758453..758902 (+) | 450 | WP_011271973.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| NF38_RS03880 (NF38_03880) | pilB | 758899..760296 (+) | 1398 | WP_038440787.1 | GspE/PulE family protein | Machinery gene |
| NF38_RS03885 (NF38_03885) | pilC | 760289..761509 (+) | 1221 | WP_011271971.1 | type II secretion system F family protein | Machinery gene |
| NF38_RS03890 (NF38_03890) | pilD | 761506..762198 (+) | 693 | WP_038440789.1 | A24 family peptidase | Machinery gene |
| NF38_RS03895 (NF38_03895) | rho | 762252..763514 (-) | 1263 | WP_005629550.1 | transcription termination factor Rho | - |
Sequence
Protein
Download Length: 149 a.a. Molecular weight: 15572.89 Da Isoelectric Point: 8.0922
>NTDB_id=130696 NF38_RS03875 WP_011271973.1 758453..758902(+) (pilA) [Haemophilus influenzae strain Hi375]
MKLTTQQTLKKGFTLIELMIVIAIIAILATIAIPSYQNYTKKAAVSELLQASAPYKADVELCVYSTNETTNCTGGKNGIA
ADITTAKGYVKSVTTSNGAITVKGDGTLANMEYILQATGNAATGVTWTTTCKGTDASLFPANFCGSVTQ
MKLTTQQTLKKGFTLIELMIVIAIIAILATIAIPSYQNYTKKAAVSELLQASAPYKADVELCVYSTNETTNCTGGKNGIA
ADITTAKGYVKSVTTSNGAITVKGDGTLANMEYILQATGNAATGVTWTTTCKGTDASLFPANFCGSVTQ
Nucleotide
Download Length: 450 bp
>NTDB_id=130696 NF38_RS03875 WP_011271973.1 758453..758902(+) (pilA) [Haemophilus influenzae strain Hi375]
ATGAAACTAACAACACAGCAAACCTTGAAAAAAGGGTTTACATTAATAGAGCTAATGATTGTGATTGCAATTATTGCTAT
TTTAGCCACTATCGCAATTCCCTCTTATCAAAATTATACTAAAAAAGCAGCGGTATCTGAATTACTGCAAGCGTCAGCGC
CTTATAAGGCTGATGTGGAATTATGTGTATATAGCACAAATGAAACAACAAACTGTACGGGTGGAAAAAATGGTATTGCA
GCAGATATAACCACAGCAAAAGGCTATGTAAAATCAGTGACAACAAGCAACGGTGCAATAACAGTAAAAGGGGATGGCAC
ATTGGCAAATATGGAATATATTTTGCAAGCTACAGGTAATGCTGCAACAGGTGTAACTTGGACAACAACTTGCAAAGGAA
CGGATGCCTCTTTATTTCCAGCAAATTTTTGCGGAAGTGTCACACAATGA
ATGAAACTAACAACACAGCAAACCTTGAAAAAAGGGTTTACATTAATAGAGCTAATGATTGTGATTGCAATTATTGCTAT
TTTAGCCACTATCGCAATTCCCTCTTATCAAAATTATACTAAAAAAGCAGCGGTATCTGAATTACTGCAAGCGTCAGCGC
CTTATAAGGCTGATGTGGAATTATGTGTATATAGCACAAATGAAACAACAAACTGTACGGGTGGAAAAAATGGTATTGCA
GCAGATATAACCACAGCAAAAGGCTATGTAAAATCAGTGACAACAAGCAACGGTGCAATAACAGTAAAAGGGGATGGCAC
ATTGGCAAATATGGAATATATTTTGCAAGCTACAGGTAATGCTGCAACAGGTGTAACTTGGACAACAACTTGCAAAGGAA
CGGATGCCTCTTTATTTCCAGCAAATTTTTGCGGAAGTGTCACACAATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Haemophilus influenzae 86-028NP |
100 |
100 |
1 |
| pilA | Haemophilus influenzae Rd KW20 |
91.946 |
100 |
0.919 |
| pilA | Glaesserella parasuis strain SC1401 |
54.362 |
100 |
0.544 |
| pilA2 | Legionella pneumophila str. Paris |
41.497 |
98.658 |
0.409 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
41.497 |
98.658 |
0.409 |
| pilA | Vibrio campbellii strain DS40M4 |
39.716 |
94.631 |
0.376 |