Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   BF33_RS27815 Genome accession   NZ_CP009605
Coordinates   5226312..5228648 (+) Length   778 a.a.
NCBI ID   WP_000528067.1    Uniprot ID   A0A0B5NRI0
Organism   Bacillus cereus strain S2-8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5221312..5233648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BF33_RS27795 (BF33_5408) cymR 5222717..5223133 (+) 417 WP_000704116.1 cysteine metabolism transcriptional regulator CymR -
  BF33_RS27800 (BF33_5409) - 5223169..5224314 (+) 1146 WP_000439912.1 cysteine desulfurase family protein -
  BF33_RS27805 (BF33_5410) mnmA 5224331..5225446 (+) 1116 WP_001038006.1 tRNA 2-thiouridine(34) synthase MnmA -
  BF33_RS27810 (BF33_5411) - 5225557..5226216 (+) 660 WP_000066395.1 tetratricopeptide repeat protein -
  BF33_RS27815 (BF33_5412) recD2 5226312..5228648 (+) 2337 WP_000528067.1 ATP-dependent RecD-like DNA helicase Machinery gene
  BF33_RS27820 (BF33_5413) - 5228776..5228964 (+) 189 WP_000469281.1 hypothetical protein -
  BF33_RS27825 (BF33_5414) - 5228983..5229111 (+) 129 WP_001053553.1 YrzQ family protein -
  BF33_RS27830 (BF33_5415) - 5229146..5229358 (-) 213 WP_000242545.1 hypothetical protein -
  BF33_RS27835 (BF33_5416) - 5229535..5230602 (+) 1068 WP_000793108.1 AI-2E family transporter -
  BF33_RS27840 (BF33_5417) - 5230641..5230985 (-) 345 WP_000209458.1 PH domain-containing protein -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87443.95 Da        Isoelectric Point: 5.2015

>NTDB_id=130649 BF33_RS27815 WP_000528067.1 5226312..5228648(+) (recD2) [Bacillus cereus strain S2-8]
MGNQHAMDLFEEEKKFIKAQVLHTIFHNEENLYSVVSMKVIETNETYDEKKVMINGHFPRMHEDEVFTLTGHFKDHPKYG
KQYLVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIVDHLGEHAISKIMDDPEALNGVVNKQKAQEIYETIVEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYQLIEEVDGIGFGRADDIGRALGISGNHDDRVRAGCFYTLENVS
LQLGHVYMRKDQLIRETMSLLNNQEGRVTEEDIISCIEMMQSEGKVIIEEERVYLASLFYSEKGVVKSIRRLMNQEETPS
FPEAEVLKTLGEIEEQLNVQYAPLQQEAIQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGLSLNPNEYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGD
EDQLPSVGPGQVLKDLLNAGAVPTVKLTEIYRQAEGSSVIQLAHAIKNGTLPPDLAQNQKDRSFIGCTGAQIVEVVKKVC
ENAKTKGFSARDVQVLAPMYRGPAGINVLNEALQEVFNPKREKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIV
SVFYAKENVEQQDMIIVSFDGIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYNRMLRRNLIYTGITRSKKF
LIICGEEAAFQSGVNRLDDAMRQTTLASRLQESQGEVQMVTVNGEEMDVENISPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=130649 BF33_RS27815 WP_000528067.1 5226312..5228648(+) (recD2) [Bacillus cereus strain S2-8]
ATGGGAAATCAACATGCAATGGATTTGTTTGAGGAAGAAAAAAAGTTTATAAAAGCGCAAGTTCTTCATACCATTTTCCA
CAACGAAGAAAACCTCTATTCCGTTGTCAGTATGAAAGTCATTGAAACGAATGAAACGTACGACGAAAAAAAAGTGATGA
TAAACGGTCATTTTCCCCGCATGCATGAAGATGAAGTGTTTACGTTGACAGGACATTTTAAAGACCATCCGAAGTATGGG
AAACAATATTTAGTTGAAACGTTTAAGAAAGAATTGCCGCAAACAAAAGCAGGTATGGTGCAATATTTAGCGAGTGATCT
ATTTAAAGGGATAGGAAAACGCACAGCTGAAAAAATTGTGGACCATCTAGGGGAACATGCTATTTCTAAAATCATGGATG
ATCCTGAGGCTTTAAACGGTGTTGTTAACAAACAAAAAGCGCAAGAAATATATGAGACAATTGTTGAACATCAAGGATTA
GAGAAAGTAATGAGTTTTTTAAATGGTTACGGTTTTGGAACGAAGCTTTCTATTAAGATTTATCAGCAATATAAAGAGAT
GACATTAGAAGTAATTCGTAATAACCCATATCAGCTTATTGAAGAAGTGGATGGGATTGGATTTGGAAGAGCGGATGATA
TCGGACGTGCGTTAGGGATATCGGGTAATCATGATGATCGTGTACGTGCGGGATGTTTTTATACGTTAGAGAATGTATCA
TTACAACTTGGTCACGTTTATATGAGAAAAGATCAACTTATAAGAGAAACGATGTCACTTTTAAATAATCAAGAAGGAAG
AGTGACGGAGGAAGACATTATAAGCTGTATTGAAATGATGCAAAGTGAAGGGAAAGTCATCATCGAAGAAGAGCGAGTAT
ATTTGGCATCGTTATTCTATTCTGAAAAAGGTGTTGTGAAGTCTATTCGCAGGCTCATGAATCAGGAAGAAACACCTTCA
TTTCCTGAAGCAGAAGTGTTAAAGACGTTAGGTGAAATTGAAGAACAATTGAACGTACAGTATGCGCCGCTTCAGCAAGA
AGCAATTCAAACGGCACTTCATAAACCGATGATGTTATTGACAGGTGGACCAGGAACAGGAAAAACAACAGTTATTAAAG
GAATTGTTGAAATGTATGCGTCACTTCACGGGCTATCGTTAAATCCGAATGAATATAGTGATGATAATCCATTTCCGATA
CTATTAACAGCTCCAACAGGAAGAGCAGCGAAGCGAATGAGTGAATCAACAGGGCTTCCAGCTTGCACAATTCACCGTTT
ACTTGGATGGACGCCAGAAGGGTCTTTCCAGCGTAATGAAACAGATCCGGTACAAGGGAAATTACTCATTATTGATGAAT
TTTCAATGGTTGATATTTGGCTTGCAAATCAGCTGTTTAAGTCATTGCCGACTAACATTCAAGTTATCGTTGTAGGCGAT
GAAGATCAATTACCATCTGTAGGACCTGGGCAAGTATTGAAAGATTTATTAAATGCAGGTGCAGTTCCAACAGTAAAGCT
TACTGAAATTTATCGTCAAGCGGAAGGTTCATCAGTGATTCAACTTGCCCATGCGATAAAAAATGGAACGCTCCCACCAG
ATTTAGCGCAAAATCAAAAAGATCGTTCATTTATTGGCTGCACAGGAGCTCAAATTGTTGAAGTTGTTAAGAAGGTTTGC
GAAAACGCTAAGACAAAAGGGTTTAGCGCAAGAGATGTACAAGTATTGGCCCCGATGTATCGTGGACCGGCTGGTATTAA
TGTACTAAATGAAGCGTTGCAAGAAGTGTTTAATCCGAAAAGAGAAAAGAGTAAAGAAATTGCTTACGGTGATGTTGTAT
ACCGAAGAGGCGATAAAGTTTTGCAACTCGTTAATCAGCCAGAGAGCCAAGTATTTAATGGTGATATCGGCGAAATTGTT
TCGGTGTTTTATGCGAAAGAAAACGTTGAGCAACAAGATATGATTATCGTTTCATTTGATGGAATTGAGGTAACATATAC
AAAACCAGATTTAAATCAAATTACACATGCTTATTGCTGTTCCATTCATAAATCGCAAGGTAGTGAGTTTCCCATTGTGA
TTATGCCGATAGTGAAAAGTTATAATCGTATGTTACGTCGTAATTTAATTTATACTGGTATTACAAGAAGTAAGAAGTTC
CTTATTATTTGCGGGGAGGAAGCTGCTTTTCAGTCTGGTGTAAATCGCCTTGATGATGCAATGCGTCAAACGACTTTAGC
TAGCCGCTTGCAAGAATCACAAGGAGAAGTACAGATGGTAACGGTTAATGGCGAAGAGATGGACGTGGAAAACATTTCAC
CGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)

AAA domain (AAA_30)

(341-548)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B5NRI0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

57.269

100

0.582

Multiple sequence alignment