Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   BF32_RS22620 Genome accession   NZ_CP009600
Coordinates   4294652..4294975 (-) Length   107 a.a.
NCBI ID   WP_000578878.1    Uniprot ID   A0A6L7H7A6
Organism   Bacillus thuringiensis strain HD571     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 4289652..4299975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BF32_RS22595 (BF32_4421) - 4289923..4291209 (+) 1287 WP_000246000.1 D-alanyl-D-alanine carboxypeptidase family protein -
  BF32_RS22600 (BF32_4422) sipW 4291404..4291973 (+) 570 WP_000767810.1 signal peptidase I SipW -
  BF32_RS22605 (BF32_4423) - 4292036..4292623 (+) 588 WP_000172840.1 CalY family protein -
  BF32_RS22610 (BF32_4424) - 4292785..4293558 (+) 774 WP_000917478.1 DUF4047 domain-containing protein -
  BF32_RS22615 (BF32_4425) calY 4293983..4294576 (+) 594 WP_000053734.1 biofilm matrix protein CalY -
  BF32_RS22620 (BF32_4426) sinR 4294652..4294975 (-) 324 WP_000578878.1 helix-turn-helix domain-containing protein Regulator
  BF32_RS22625 - 4295055..4295189 (-) 135 WP_000276214.1 anti-repressor SinI family protein -
  BF32_RS22630 (BF32_4427) inhA1 4295533..4297920 (+) 2388 WP_001035926.1 M6 family metalloprotease immune inhibitor InhA1 -
  BF32_RS22635 (BF32_4428) - 4298092..4299459 (+) 1368 WP_000116793.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12319.17 Da        Isoelectric Point: 9.6244

>NTDB_id=130584 BF32_RS22620 WP_000578878.1 4294652..4294975(-) (sinR) [Bacillus thuringiensis strain HD571]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKEANLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=130584 BF32_RS22620 WP_000578878.1 4294652..4294975(-) (sinR) [Bacillus thuringiensis strain HD571]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAAATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAGCTAACCTAGACTCCGAATGGACACAGCTCGTC
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAATGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(72-99)

Helix-turn-helix (HTH_3)

(6-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6L7H7A6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692

Multiple sequence alignment