Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   JL53_RS07620 Genome accession   NZ_CP009576
Coordinates   1543999..1545690 (+) Length   563 a.a.
NCBI ID   WP_038407257.1    Uniprot ID   -
Organism   Listeria ivanovii subsp. londoniensis strain WSLC 30151     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1538999..1550690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JL53_RS07595 (JL53_07595) - 1539145..1540026 (+) 882 WP_038407256.1 polyprenyl synthetase family protein -
  JL53_RS07600 (JL53_07600) - 1540225..1540425 (+) 201 WP_012985572.1 cold-shock protein -
  JL53_RS07605 (JL53_07605) dxs 1540593..1542513 (+) 1921 Protein_1501 1-deoxy-D-xylulose-5-phosphate synthase -
  JL53_RS07610 (JL53_07610) - 1542510..1543334 (+) 825 WP_003719641.1 TlyA family RNA methyltransferase -
  JL53_RS07615 (JL53_07615) ahrC 1543527..1543976 (+) 450 WP_003719642.1 transcriptional regulator AhrC/ArgR -
  JL53_RS07620 (JL53_07620) recN 1543999..1545690 (+) 1692 WP_038407257.1 DNA repair protein RecN Machinery gene
  JL53_RS07625 (JL53_07625) - 1545820..1546686 (+) 867 WP_038407258.1 phosphate acyltransferase -
  JL53_RS07630 (JL53_07630) buk 1546822..1547889 (+) 1068 WP_038407259.1 butyrate kinase -
  JL53_RS07635 (JL53_07635) lpdA 1547904..1549331 (+) 1428 WP_038407260.1 dihydrolipoyl dehydrogenase -
  JL53_RS07640 (JL53_07640) - 1549356..1550351 (+) 996 WP_003719647.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63687.49 Da        Isoelectric Point: 5.1287

>NTDB_id=130352 JL53_RS07620 WP_038407257.1 1543999..1545690(+) (recN) [Listeria ivanovii subsp. londoniensis strain WSLC 30151]
MLQEMTIKNFAIIESLSLSFREGMTVLTGETGAGKSIIIDALGLLVGGRGSTDFIRHGEERLELQGLFALAEDNLACRDA
LLEHGIDATDNMVVLERNLFRSGKNSCRINGKLVTTVLLRQIGSKLIDIHSQHEHQELMNEEFHLSLLDRFAADKIKSAL
TKYQANFKEYQSISKEWQNWTKNERELAQRLDMLRFQQQEIENANLQAGEEDRLLEQKNILANFEKLNENLQGAYTAIQG
EPGGLEFIGEAMRQMDSAASIHADYKVVSEAISSSYYMLEDSMSQIRQSLDQLEFQPEELNQIESRLNDLNQLKRKYGKT
IEDIIHYEQEISSEMEKLTDSESHVGHLETKLANLKVELIKQATILTDIRKKAATTLEKQIKQELNQLYMEKAIFSVRFE
TEKMELTETGQDSIVFYMSTNPGEPLKPLAKIASGGELSRMMLALKTIFSRHQGITSIIFDEVDTGVSGRVGQAIAEKIY
AVSVGSQVLCISHLPQVAAMANHHYYITKKVQNKRTTTSVTILTGDEKVEEISRMIAGIEVTELTKQHAKEMIEQAERVK
ETY

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=130352 JL53_RS07620 WP_038407257.1 1543999..1545690(+) (recN) [Listeria ivanovii subsp. londoniensis strain WSLC 30151]
TTGCTTCAAGAAATGACAATTAAAAACTTTGCTATCATCGAATCGCTATCTTTGAGTTTTCGGGAAGGGATGACGGTATT
AACGGGGGAGACCGGCGCAGGTAAATCAATTATTATTGATGCGCTTGGTCTTCTTGTTGGCGGGCGCGGCTCCACGGATT
TTATTCGTCACGGAGAAGAACGACTCGAATTACAAGGGCTATTTGCACTAGCAGAAGATAATTTGGCGTGCCGAGATGCG
CTTTTGGAACATGGAATAGATGCAACAGATAATATGGTTGTTTTAGAACGCAACTTATTTCGCTCAGGTAAAAATAGTTG
TCGGATTAACGGCAAGTTGGTTACTACCGTGTTACTTCGTCAAATAGGTTCTAAATTAATTGATATCCATAGTCAACATG
AACACCAAGAACTCATGAATGAGGAATTCCATTTATCACTACTAGATCGCTTTGCTGCTGATAAAATCAAATCAGCGCTA
ACGAAATATCAAGCGAATTTTAAAGAGTATCAATCCATTTCAAAAGAATGGCAAAATTGGACGAAAAATGAACGTGAACT
TGCGCAACGTCTTGATATGCTCCGTTTTCAACAACAAGAAATCGAAAATGCTAATCTACAAGCTGGTGAAGAAGATCGTT
TATTAGAACAAAAAAATATTCTAGCTAATTTTGAAAAATTAAACGAAAACTTACAAGGTGCTTATACCGCCATTCAGGGT
GAGCCGGGTGGGCTTGAATTTATTGGAGAAGCGATGCGCCAGATGGATTCTGCTGCTAGTATTCATGCGGACTATAAAGT
TGTTAGTGAAGCAATCTCATCTAGTTATTATATGTTAGAGGATAGTATGAGCCAAATTAGGCAATCACTCGATCAATTAG
AGTTTCAACCAGAAGAACTTAACCAAATCGAATCACGCCTCAATGATCTCAACCAATTGAAACGCAAATATGGCAAAACG
ATTGAAGATATCATTCACTACGAACAAGAAATTAGTAGCGAGATGGAGAAATTAACAGATAGTGAGTCGCATGTTGGTCA
CTTAGAAACCAAACTAGCCAATTTAAAGGTGGAGCTTATAAAACAAGCGACCATATTAACTGACATTCGCAAAAAGGCGG
CAACGACACTAGAAAAACAAATTAAACAAGAACTAAACCAACTTTATATGGAAAAAGCGATTTTTAGCGTTCGTTTTGAA
ACCGAGAAAATGGAATTGACAGAAACAGGACAAGATAGTATCGTTTTTTATATGTCTACCAACCCTGGTGAACCATTAAA
ACCACTTGCGAAAATTGCTTCAGGTGGAGAGTTGTCCCGGATGATGTTAGCACTTAAAACCATTTTTTCTAGACACCAAG
GAATCACCTCCATTATTTTTGATGAAGTTGATACAGGTGTAAGTGGTCGTGTTGGACAGGCGATTGCAGAGAAAATTTAT
GCCGTTTCTGTTGGCTCACAAGTTCTTTGCATCAGTCATTTGCCACAAGTTGCTGCAATGGCTAACCATCATTATTACAT
CACCAAAAAAGTTCAAAACAAACGTACAACAACTTCAGTTACCATCCTAACAGGTGATGAAAAAGTAGAAGAAATTAGCC
GAATGATTGCTGGGATTGAAGTGACAGAACTAACTAAACAACATGCAAAAGAAATGATTGAACAAGCTGAAAGAGTAAAA
GAAACTTATTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.083

100

0.533

Multiple sequence alignment