Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdL   Type   Machinery gene
Locus tag   GACE_RS02695 Genome accession   NZ_CP009552
Coordinates   458952..460433 (+) Length   493 a.a.
NCBI ID   WP_084063747.1    Uniprot ID   -
Organism   Geoglobus acetivorans strain SBH6     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 453952..465433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GACE_RS02655 (GACE_0534) - 454153..454563 (+) 411 WP_048093553.1 DUF1641 domain-containing protein -
  GACE_RS02660 (GACE_0535) - 454600..455031 (+) 432 WP_048090950.1 hypothetical protein -
  GACE_RS02665 (GACE_0536) - 454998..455525 (+) 528 WP_048090952.1 PUA domain-containing protein -
  GACE_RS02670 (GACE_0537) - 455522..456514 (-) 993 WP_202962746.1 L-threonylcarbamoyladenylate synthase -
  GACE_RS02675 (GACE_0538) - 456594..456983 (-) 390 WP_048093557.1 DUF473 domain-containing protein -
  GACE_RS02680 (GACE_0539) - 456989..457705 (-) 717 WP_048090954.1 proteasome assembly chaperone family protein -
  GACE_RS02685 (GACE_0540) - 457756..458064 (+) 309 WP_048090956.1 DUF5611 family protein -
  GACE_RS02690 (GACE_0541) - 458061..458705 (-) 645 WP_048090958.1 Yip1 family protein -
  GACE_RS02695 (GACE_0542) epdL 458952..460433 (+) 1482 WP_084063747.1 type II/IV secretion system ATPase subunit Machinery gene
  GACE_RS02700 (GACE_0543) - 460417..462324 (+) 1908 WP_048093559.1 type II secretion system F family protein -
  GACE_RS02705 - 462274..463101 (-) 828 WP_048090962.1 DMT family transporter -
  GACE_RS02710 (GACE_0545) - 463298..464800 (+) 1503 WP_048090964.1 Na+/H+ antiporter -

Sequence

Protein


Download         Length: 493 a.a.        Molecular weight: 57388.96 Da        Isoelectric Point: 5.4414

>NTDB_id=130145 GACE_RS02695 WP_084063747.1 458952..460433(+) (epdL) [Geoglobus acetivorans strain SBH6]
MRLEEVKSEEEPEYVLVEEYWIDEPFSKIQIRFNKDTQEHVYYVVVPKLDGYLFSVYYVLKNTVVEYLESDVEQVDDRVK
HLEEMSRKLLKELGIEVEEEDFQKIFYHLKSDFIEYGPITPLMKDRLIEDISCNGYNKPIYIYHRNYQNIRTNLTFREDE
LDMFVIKLAQMSGKHISIAEPLLDASLPDGSRIQMTLAREVTDHGSTFTIRKFREEPVTPVDLIAWGTFSIEQMAYLWLC
IENKRSLIFAGGTASGKTTSMNAVSIFIPRSSKIVTIEDTREIMLPHENWIPAVTRETGKVVDMYDLLRAALRQRPEYII
VGEVRGKEALTLFQAMSTGHTTYSTLHADSVNGVIHRLENPPINVPRAMIEALDIVSIQAQVFMGKKRVRRNLEIAEIIG
VDPHTKIMRTTTVFTWDSSKDEHVMVGSSKALEELRIMRNWSRKELEQELKRREAVLKYMLDKNIRDFKEVARIIQTYQV
DPDKVVSEFGIQI

Nucleotide


Download         Length: 1482 bp        

>NTDB_id=130145 GACE_RS02695 WP_084063747.1 458952..460433(+) (epdL) [Geoglobus acetivorans strain SBH6]
ATGAGACTGGAAGAAGTCAAATCAGAAGAAGAGCCCGAATACGTTCTTGTAGAAGAATACTGGATAGATGAGCCTTTCTC
CAAGATTCAAATAAGGTTCAATAAAGACACTCAGGAACATGTGTATTATGTTGTAGTTCCCAAGCTTGATGGTTATCTGT
TTTCCGTGTATTATGTTCTGAAAAATACTGTTGTGGAATACCTGGAAAGCGATGTGGAGCAGGTGGATGACAGAGTAAAG
CATCTTGAAGAGATGTCGAGAAAGCTGCTGAAAGAACTTGGGATAGAAGTCGAGGAGGAAGATTTTCAGAAGATATTTTA
CCACCTCAAGTCCGACTTCATTGAATACGGCCCCATAACCCCCCTCATGAAGGACCGCCTGATAGAAGACATCTCCTGCA
ACGGCTACAACAAGCCCATATACATCTACCACCGCAACTACCAGAACATCAGAACAAACCTCACCTTCAGAGAGGACGAG
CTTGACATGTTCGTCATAAAGCTTGCCCAGATGTCGGGCAAGCACATAAGCATAGCCGAACCTCTCCTGGATGCATCCCT
TCCAGACGGATCAAGAATCCAGATGACCTTGGCCAGGGAAGTCACGGACCACGGCTCCACATTCACCATAAGAAAGTTCA
GAGAGGAACCCGTAACTCCAGTGGATCTCATCGCCTGGGGAACCTTCAGCATAGAGCAGATGGCCTACCTCTGGCTCTGC
ATAGAGAACAAGAGGTCCCTCATCTTCGCAGGAGGAACTGCAAGCGGAAAAACCACGTCCATGAACGCCGTCTCAATCTT
CATCCCGAGAAGCTCGAAGATAGTGACCATTGAGGACACGAGAGAGATAATGCTCCCCCACGAGAACTGGATTCCCGCAG
TCACAAGGGAAACAGGAAAGGTAGTGGACATGTACGATTTGCTGAGAGCAGCCTTGAGACAGAGACCCGAATACATAATA
GTTGGAGAGGTCAGGGGAAAGGAGGCACTGACCCTCTTCCAGGCAATGTCCACCGGCCACACCACCTACTCAACCCTGCA
TGCCGACTCTGTCAACGGCGTCATCCACAGGCTTGAAAACCCGCCCATAAACGTCCCCAGAGCAATGATCGAAGCTTTGG
ACATAGTCAGCATACAGGCCCAGGTCTTCATGGGCAAGAAGAGGGTGAGAAGAAACTTAGAGATAGCTGAAATCATAGGC
GTTGACCCCCACACCAAGATCATGAGAACCACAACAGTCTTCACCTGGGACTCAAGCAAGGACGAACACGTGATGGTCGG
CAGTTCAAAGGCCCTTGAAGAACTCAGAATCATGAGGAACTGGTCGAGAAAGGAACTGGAACAGGAGCTTAAGAGAAGGG
AAGCAGTCCTCAAATACATGCTCGACAAAAACATAAGAGACTTTAAGGAAGTCGCCAGAATAATTCAGACCTATCAGGTA
GATCCGGATAAGGTGGTGAGTGAATTTGGTATTCAGATCTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(125-363)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdL Methanoculleus thermophilus strain DSM 2373

50.628

96.957

0.491

Multiple sequence alignment