Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   PA50071_RS10025 Genome accession   NZ_CP012001
Coordinates   2164175..2164531 (+) Length   118 a.a.
NCBI ID   WP_003091119.1    Uniprot ID   A0A0H2ZD30
Organism   Pseudomonas aeruginosa DSM 50071 = NBRC 12689 strain DSM 50071     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2159175..2169531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PA50071_RS10000 (PA50071_10000) fabF 2159387..2160631 (+) 1245 WP_003104132.1 beta-ketoacyl-ACP synthase II -
  PA50071_RS10005 (PA50071_10005) pabC 2160631..2161446 (+) 816 WP_003110198.1 aminodeoxychorismate lyase -
  PA50071_RS10010 (PA50071_10010) mltG 2161452..2162501 (+) 1050 WP_003104128.1 endolytic transglycosylase MltG -
  PA50071_RS10015 (PA50071_10015) tmk 2162530..2163162 (+) 633 WP_003122486.1 dTMP kinase -
  PA50071_RS10020 (PA50071_10020) - 2163155..2164141 (+) 987 WP_003104126.1 DNA polymerase III subunit delta' -
  PA50071_RS10025 (PA50071_10025) pilZ 2164175..2164531 (+) 357 WP_003091119.1 PilZ domain-containing protein Machinery gene
  PA50071_RS10030 (PA50071_10030) - 2164546..2165322 (+) 777 WP_048521023.1 TatD family hydrolase -
  PA50071_RS10035 (PA50071_10035) - 2165548..2166681 (-) 1134 WP_003118082.1 aminotransferase class V-fold PLP-dependent enzyme -
  PA50071_RS10040 (PA50071_10040) - 2166767..2167405 (+) 639 WP_003091114.1 TetR/AcrR family transcriptional regulator -
  PA50071_RS29370 - 2167555..2167677 (+) 123 Protein_2004 radical SAM protein -
  PA50071_RS10045 (PA50071_10045) - 2168393..2169521 (-) 1129 Protein_2005 IS3 family transposase -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12903.98 Da        Isoelectric Point: 9.9969

>NTDB_id=130035 PA50071_RS10025 WP_003091119.1 2164175..2164531(+) (pilZ) [Pseudomonas aeruginosa DSM 50071 = NBRC 12689 strain DSM 50071]
MSLPPNLGPRNGILSLTIKDKSVLYAAYMPFIRNGGLFIPTNKNYKLGDEVFMLLNLMEEPEKIPVAGKVVWITPKGAQG
NRAAGIGVQFNDGDNTARNKIETYLAGALKSDRPTHTM

Nucleotide


Download         Length: 357 bp        

>NTDB_id=130035 PA50071_RS10025 WP_003091119.1 2164175..2164531(+) (pilZ) [Pseudomonas aeruginosa DSM 50071 = NBRC 12689 strain DSM 50071]
ATGAGTTTGCCACCCAATCTGGGGCCGCGTAACGGCATCCTGTCCTTGACCATCAAGGACAAGTCCGTGCTGTACGCCGC
CTACATGCCGTTCATCAGGAACGGCGGGCTGTTCATTCCCACCAACAAGAACTACAAGCTCGGCGACGAAGTCTTCATGC
TGCTCAACCTGATGGAAGAGCCGGAGAAGATCCCGGTGGCCGGCAAGGTCGTCTGGATCACCCCGAAGGGCGCCCAGGGC
AACCGTGCGGCGGGCATCGGCGTGCAGTTCAACGACGGTGACAACACCGCCCGCAACAAGATCGAAACCTACCTGGCCGG
GGCGCTGAAGTCGGACCGGCCGACCCACACGATGTAA

Domains

Predicted by InterProScan.

PilZ domain (PilZ)

(17-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZD30

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

49.074

91.525

0.449
  pilZ Legionella pneumophila strain ERS1305867

49.074

91.525

0.449