Detailed information NTG0130022

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PA50071_RS06655
• Genome accession: NZ_CP012001
• Coordinates: 1434341..1435345 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa DSM 50071 = NBRC 12689 strain DSM 50071
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1429341..1440345

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PA50071_RS06625 (PA50071_06625)	fghA	1429433..1430284 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
PA50071_RS06630 (PA50071_06630)	ispF	1430355..1430828 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PA50071_RS06635 (PA50071_06635)	truD	1430825..1431892 (+)	1068	WP_004345456.1	tRNA pseudouridine(13) synthase TruD	-
PA50071_RS06640 (PA50071_06640)	surE	1431880..1432629 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PA50071_RS06645 (PA50071_06645)	-	1432662..1433297 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PA50071_RS06650 (PA50071_06650)	-	1433343..1434236 (+)	894	WP_003143263.1	peptidoglycan DD-metalloendopeptidase family protein	-
PA50071_RS06655 (PA50071_06655)	rpoS	1434341..1435345 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PA50071_RS06660 (PA50071_06660)	fdxA	1435772..1436095 (-)	324	WP_003092272.1	ferredoxin FdxA	-
PA50071_RS06665 (PA50071_06665)	mutS	1436162..1438729 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
PA50071_RS06670 (PA50071_06670)	-	1438855..1439862 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=130022 PA50071_RS06655 WP_003113871.1 1434341..1435345(+) (rpoS) [Pseudomonas aeruginosa DSM 50071 = NBRC 12689 strain DSM 50071]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=130022 PA50071_RS06655 WP_003113871.1 1434341..1435345(+) (rpoS) [Pseudomonas aeruginosa DSM 50071 = NBRC 12689 strain DSM 50071]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGTCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653