Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   LX00_RS15985 Genome accession   NZ_CP009534
Coordinates   3386741..3387625 (-) Length   294 a.a.
NCBI ID   WP_024437247.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Strain AbH12O-A2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3381741..3392625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LX00_RS15970 (LX00_16245) miaB 3383588..3385039 (+) 1452 WP_000218141.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  LX00_RS15975 (LX00_16250) - 3385077..3386165 (+) 1089 WP_000122983.1 PhoH family protein -
  LX00_RS15980 (LX00_16255) ybeY 3386175..3386651 (+) 477 WP_000703570.1 rRNA maturation RNase YbeY -
  LX00_RS15985 (LX00_16260) tonB2 3386741..3387625 (-) 885 WP_024437247.1 energy transducer TonB Machinery gene
  LX00_RS15990 (LX00_16265) - 3387856..3388527 (+) 672 WP_001193959.1 hypothetical protein -
  LX00_RS15995 (LX00_16270) - 3388685..3389398 (+) 714 WP_000201544.1 DUF3108 domain-containing protein -
  LX00_RS16000 (LX00_16275) - 3389471..3390046 (+) 576 WP_000543071.1 xanthine phosphoribosyltransferase -
  LX00_RS16005 (LX00_16280) wrbA 3390099..3390692 (-) 594 WP_001183347.1 NAD(P)H:quinone oxidoreductase -
  LX00_RS16010 (LX00_16285) - 3390980..3392227 (+) 1248 WP_000893466.1 YihY family inner membrane protein -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33664.57 Da        Isoelectric Point: 9.0935

>NTDB_id=129938 LX00_RS15985 WP_024437247.1 3386741..3387625(-) (tonB2) [Acinetobacter baumannii strain Strain AbH12O-A2]
MLKKRSLSIEPFYYWWQDRIFIVAIILAILLHIFVLLIHFAMPAPSEQSTKEIAISIRPTEDVIKHADFLAQADQQGSGA
FREAHRMSSNSPAPMPSDASTGEAQLETLEKVQQQRELKFEEKVLMTVLSWQKQAEESQRKKALEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHPVLDEAAKASVRRGAPFGRFDANMKDISELRIIRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=129938 LX00_RS15985 WP_024437247.1 3386741..3387625(-) (tonB2) [Acinetobacter baumannii strain Strain AbH12O-A2]
ATGTTGAAAAAAAGAAGTCTATCCATAGAGCCTTTTTATTATTGGTGGCAAGACCGAATCTTTATTGTCGCGATAATACT
CGCAATCTTACTGCATATTTTTGTGTTGCTCATCCATTTTGCGATGCCTGCGCCGTCAGAACAATCGACTAAAGAAATTG
CAATATCGATTCGTCCTACTGAAGATGTGATCAAGCATGCAGACTTCTTAGCTCAAGCCGATCAACAAGGTTCAGGGGCT
TTTCGGGAAGCTCATCGGATGTCGAGTAACTCTCCAGCGCCTATGCCAAGTGATGCTTCAACAGGAGAAGCTCAGCTAGA
AACTTTAGAAAAAGTGCAGCAACAAAGAGAACTTAAATTTGAAGAAAAAGTACTCATGACTGTATTGAGTTGGCAGAAAC
AAGCAGAGGAGAGCCAAAGAAAAAAAGCACTTGAACAATTACAAAGTCAGTTTCAGGCAAAAGCTGCCATGGTAGCGAGT
CTTGAAGCTCAGTATTTACAACGTCAGCAAGATTTTAGTCGCCAACAAAAAATAAAAACAGTAGATGGTATTCAAGCCAA
GAAAGATGCGTCGGCAGCTTATCTAGATAAATTTCGTGAAAAAGTAGAGCTTTATGGCAACCGTTATTATCCAGAAGAAG
CGAAACAGCAACAGTTAAAAGGTGAAGTTCGCCTTATGGTAATTTTGAATGCTCAAGGGGGAATTCGTGCAATTCGTTTG
CTTGAAAGCTCAGGTCATCCAGTTCTAGATGAAGCAGCAAAGGCATCGGTACGGCGTGGAGCGCCGTTTGGCCGTTTTGA
TGCAAATATGAAAGATATTTCGGAGCTTCGTATTATTCGTACATGGCGTTTTGATCCAGCTGAAGCTGAATTTGAAGTTC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

99.32

100

0.993

Multiple sequence alignment