Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | LX00_RS07875 | Genome accession | NZ_CP009534 |
| Coordinates | 1684509..1684889 (+) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain Strain AbH12O-A2 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1679509..1689889
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LX00_RS07845 (LX00_07965) | kdsB | 1680412..1681173 (+) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| LX00_RS07850 (LX00_07970) | - | 1681185..1682165 (+) | 981 | WP_001075416.1 | DNA polymerase III subunit delta' | - |
| LX00_RS07855 (LX00_07975) | - | 1682177..1682518 (+) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| LX00_RS07860 (LX00_07980) | - | 1682536..1683309 (+) | 774 | WP_000497301.1 | TatD family hydrolase | - |
| LX00_RS07865 (LX00_07985) | - | 1683347..1683955 (+) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| LX00_RS07870 (LX00_07990) | - | 1683965..1684519 (+) | 555 | WP_000841373.1 | type II secretion system protein | - |
| LX00_RS07875 (LX00_07995) | xcpV | 1684509..1684889 (+) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| LX00_RS07880 (LX00_08000) | xcpW | 1684889..1685590 (+) | 702 | WP_000594590.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| LX00_RS07885 (LX00_08005) | gspK | 1685590..1686549 (+) | 960 | WP_000301471.1 | type II secretion system minor pseudopilin GspK | - |
| LX00_RS07890 (LX00_08010) | - | 1686780..1687376 (+) | 597 | WP_000908453.1 | 6-carboxytetrahydropterin synthase | - |
| LX00_RS07895 (LX00_08015) | ung | 1687427..1688140 (+) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| LX00_RS07900 (LX00_08020) | - | 1688137..1689261 (+) | 1125 | WP_086241960.1 | enoyl-CoA hydratase/isomerase family protein | - |
| LX00_RS07905 (LX00_08025) | tadA | 1689268..1689771 (+) | 504 | WP_000033177.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=129931 LX00_RS07875 WP_000836911.1 1684509..1684889(+) (xcpV) [Acinetobacter baumannii strain Strain AbH12O-A2]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=129931 LX00_RS07875 WP_000836911.1 1684509..1684889(+) (xcpV) [Acinetobacter baumannii strain Strain AbH12O-A2]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |