Detailed information NTG0129896

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: TZ57_RS13390
• Genome accession: NZ_CP011938
• Coordinates: 2685586..2686578 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain C43(DE3)
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2680586..2691578

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
TZ57_RS13370 (TZ57_13375)	otnK	2681361..2682623 (+)	1263	WP_000590371.1	3-oxo-tetronate kinase	-
TZ57_RS13375 (TZ57_13380)	ygbL	2682620..2683258 (+)	639	WP_001278994.1	aldolase	-
TZ57_RS13380 (TZ57_13385)	ygbM	2683263..2684039 (+)	777	WP_001136925.1	HPr family phosphocarrier protein	-
TZ57_RS13385 (TZ57_13390)	ygbN	2684128..2685492 (+)	1365	WP_000104459.1	GntP family transporter	-
TZ57_RS13390 (TZ57_13395)	rpoS	2685586..2686578 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
TZ57_RS13395 (TZ57_13400)	nlpD	2686641..2687735 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
TZ57_RS13400 (TZ57_13405)	pcm	2687920..2688546 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
TZ57_RS13405 (TZ57_13410)	surE	2688540..2689301 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
TZ57_RS13410 (TZ57_13415)	truD	2689282..2690331 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
TZ57_RS13415 (TZ57_13420)	ispF	2690328..2690807 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
TZ57_RS13420 (TZ57_13425)	ispD	2690807..2691517 (-)	711	WP_000246144.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=129896 TZ57_RS13390 WP_000081550.1 2685586..2686578(-) (rpoS) [Escherichia coli strain C43(DE3)]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=129896 TZ57_RS13390 WP_000081550.1 2685586..2686578(-) (rpoS) [Escherichia coli strain C43(DE3)]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715