Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   TZ57_RS10080 Genome accession   NZ_CP011938
Coordinates   1978427..1979854 (+) Length   475 a.a.
NCBI ID   WP_000980563.1    Uniprot ID   -
Organism   Escherichia coli strain C43(DE3)     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1973427..1984854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TZ57_RS25145 (TZ57_10050) - 1973851..1973931 (+) 81 Protein_1941 hypothetical protein -
  TZ57_RS10050 (TZ57_10055) - 1974220..1974366 (-) 147 Protein_1942 transposase domain-containing protein -
  TZ57_RS10055 (TZ57_10060) - 1974420..1974602 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  TZ57_RS10060 (TZ57_10065) tmaR 1974703..1975032 (-) 330 WP_000450409.1 DUF496 family protein -
  TZ57_RS10065 (TZ57_10070) yeeA 1975204..1976262 (-) 1059 WP_001200905.1 FUSC family protein -
  TZ57_RS10070 (TZ57_10075) sbmC 1976460..1976933 (-) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  TZ57_RS10075 (TZ57_10080) dacD 1977052..1978218 (-) 1167 WP_001320295.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  TZ57_RS10080 (TZ57_10085) sbcB 1978427..1979854 (+) 1428 WP_000980563.1 exodeoxyribonuclease I Machinery gene
  TZ57_RS10085 (TZ57_10090) tsuB 1979897..1980124 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  TZ57_RS10090 (TZ57_10095) tsuA 1980138..1981196 (-) 1059 WP_000492348.1 thiosulfate utilization transporter TsuA/YeeE -
  TZ57_RS10095 (TZ57_10100) plaP 1981375..1982733 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  TZ57_RS24870 yoeI 1982723..1982785 (-) 63 WP_010723108.1 membrane protein YoeI -
  TZ57_RS10100 (TZ57_10105) yeeY 1983000..1983929 (-) 930 WP_000803363.1 LysR substrate-binding domain-containing protein -
  TZ57_RS10105 (TZ57_10110) yeeZ 1983975..1984799 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54484.77 Da        Isoelectric Point: 5.6054

>NTDB_id=129883 TZ57_RS10080 WP_000980563.1 1978427..1979854(+) (sbcB) [Escherichia coli strain C43(DE3)]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAQEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=129883 TZ57_RS10080 WP_000980563.1 1978427..1979854(+) (sbcB) [Escherichia coli strain C43(DE3)]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGATGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGT
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTTGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGCAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581