Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LACWKB8_RS07590 Genome accession   NZ_CP009531
Coordinates   1618504..1620309 (+) Length   601 a.a.
NCBI ID   WP_038524168.1    Uniprot ID   -
Organism   Lactobacillus sp. wkB8     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1613504..1625309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LACWKB8_RS07565 (LACWKB8_1558) - 1613862..1614338 (-) 477 WP_038524153.1 threonine/serine exporter family protein -
  LACWKB8_RS07570 (LACWKB8_1559) - 1614341..1615120 (-) 780 WP_038524156.1 threonine/serine exporter family protein -
  LACWKB8_RS07575 (LACWKB8_1560) - 1615130..1616677 (-) 1548 WP_038524159.1 ABC-F family ATP-binding cassette domain-containing protein -
  LACWKB8_RS07580 (LACWKB8_1561) - 1616784..1617143 (-) 360 WP_038524162.1 hypothetical protein -
  LACWKB8_RS07585 (LACWKB8_1562) - 1617176..1618354 (-) 1179 WP_038524165.1 LCP family protein -
  LACWKB8_RS07590 (LACWKB8_1563) pepF 1618504..1620309 (+) 1806 WP_038524168.1 oligoendopeptidase F Regulator
  LACWKB8_RS07595 (LACWKB8_1564) - 1620418..1621560 (-) 1143 WP_038524171.1 ArgE/DapE family deacylase -
  LACWKB8_RS07600 (LACWKB8_1565) - 1621574..1622323 (-) 750 WP_038524174.1 amino acid ABC transporter ATP-binding protein -
  LACWKB8_RS07605 (LACWKB8_1566) - 1622316..1623806 (-) 1491 WP_038524177.1 ABC transporter substrate-binding protein/permease -
  LACWKB8_RS07610 (LACWKB8_1567) - 1623968..1625197 (-) 1230 WP_038524180.1 lactate oxidase -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 68406.59 Da        Isoelectric Point: 4.8568

>NTDB_id=129879 LACWKB8_RS07590 WP_038524168.1 1618504..1620309(+) (pepF) [Lactobacillus sp. wkB8]
MTIPKRKDVPENLKWDLTRIFKSDEDWEDEYTRVKKEIPALSTIKDNFTTSGTSLYDGITQIFAVTRHLEKVYTYASLSS
DVDTKDAHYLGLVSQVQGLGNQFDAATAFMAPAILSLSPEKLAAFKREEPRLADYNHLLDQITRMRPYTLSAQEEKLVAD
AGDAMSASENTYNVLTNSDMEFGYTQNDDGEMVQLSEGLYSLLIQSQNRTIRKEAFDAMYATYGQYQNSLAATLSGVVKK
HNYYARVHHYKSARDCAINENNVPAAVYDTLIAEVNKHIDLLHEYVALRKQILGLKDLQMWDIYVPLTGKPSLSYTFDSA
KAEAQKALQPLGADYLKQVDYIFNNRVIDVVESKNKVTGAYSGGCYDTDAYELLNWEDNIDSLYTLVHETGHSVHSMYTR
QNQPYVYGNYPIFVAEIASTTNENILTEYFLAHVKDPKTRAFVLNYYLDSFKGTLFRQAQFAEFEQKIHEMDAQGEPLTA
DRLNKCYGELNQRYYGDCVEPGGEIAKEWTRIPHFYYNFYVYQYATGFAAATALANNVVHGTEEQTTAYINFLKSGSSDY
PVEIMKKAGVDMTQPEYLEEAFATFAKRLAEFKEIVQNNFS

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=129879 LACWKB8_RS07590 WP_038524168.1 1618504..1620309(+) (pepF) [Lactobacillus sp. wkB8]
ATGACAATTCCTAAAAGAAAAGACGTCCCTGAAAATCTTAAATGGGACTTAACCAGAATATTCAAATCTGATGAAGACTG
GGAAGATGAATATACACGTGTTAAAAAAGAAATACCAGCTTTAAGCACTATCAAAGATAATTTTACTACTTCGGGAACCT
CTTTATATGACGGGATTACGCAAATATTTGCAGTTACTCGCCACTTGGAAAAAGTTTATACTTATGCCAGTTTGTCCAGT
GATGTCGATACCAAAGATGCCCACTATTTAGGTTTAGTTTCTCAAGTACAAGGACTAGGTAATCAATTTGATGCCGCTAC
CGCTTTTATGGCTCCTGCAATTTTAAGCCTTTCCCCTGAGAAATTAGCCGCCTTTAAACGCGAAGAACCAAGACTAGCTG
ATTACAATCATTTATTGGATCAGATTACCAGAATGCGACCATATACTTTATCTGCTCAAGAAGAAAAATTAGTTGCCGAT
GCTGGAGATGCAATGTCTGCTTCTGAAAACACCTATAATGTGCTGACTAATTCGGATATGGAATTTGGTTATACGCAAAA
TGATGACGGCGAAATGGTGCAATTATCGGAAGGACTATATTCCCTACTAATCCAATCGCAAAACAGAACTATCCGCAAGG
AAGCTTTTGACGCCATGTATGCCACATATGGTCAATACCAAAACTCATTGGCGGCCACTCTTTCTGGAGTAGTCAAGAAG
CATAACTATTATGCGCGCGTTCATCATTATAAATCAGCCCGCGATTGCGCGATTAACGAAAACAATGTACCGGCAGCTGT
TTACGATACCTTAATTGCAGAGGTAAACAAGCATATAGACTTACTACATGAATATGTGGCTCTGCGTAAACAAATTTTAG
GTTTAAAAGACCTGCAAATGTGGGACATCTATGTGCCCCTGACAGGCAAACCATCTTTAAGCTATACATTTGACTCAGCC
AAAGCGGAAGCGCAAAAAGCGTTGCAACCACTTGGAGCAGATTATTTAAAACAGGTAGACTATATTTTCAATAATCGGGT
AATTGATGTCGTTGAATCAAAAAATAAAGTTACAGGGGCTTATTCTGGTGGCTGCTATGATACGGACGCTTACGAACTCC
TTAACTGGGAGGATAATATTGATTCTCTGTATACTTTAGTACACGAAACGGGACATTCAGTTCACAGTATGTATACGAGA
CAAAATCAGCCTTACGTTTATGGTAATTATCCTATATTTGTTGCCGAAATTGCTTCAACTACTAACGAAAACATCTTAAC
CGAATACTTTTTAGCCCATGTAAAAGATCCTAAAACACGTGCCTTTGTTCTTAATTACTACTTGGACTCATTTAAAGGGA
CTTTATTCAGACAAGCTCAATTCGCCGAATTTGAACAAAAAATTCACGAAATGGATGCTCAGGGTGAGCCTTTAACTGCT
GACCGGCTAAATAAATGCTATGGTGAACTTAACCAGCGCTACTATGGCGATTGCGTTGAACCGGGCGGAGAAATTGCCAA
AGAGTGGACCAGAATCCCCCACTTTTACTACAATTTCTACGTCTACCAGTATGCTACAGGTTTTGCTGCAGCTACAGCTC
TGGCTAATAACGTTGTTCATGGCACCGAAGAACAAACAACAGCTTACATTAACTTTTTAAAATCTGGTTCAAGTGACTAT
CCGGTTGAAATCATGAAAAAAGCAGGCGTTGACATGACTCAACCTGAATATTTGGAAGAAGCATTTGCCACTTTTGCCAA
ACGCTTAGCTGAATTTAAGGAAATTGTTCAAAATAATTTCAGTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(114-182)

Peptidase family M3 (Peptidase_M3)

(203-583)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.493

98.502

0.488

Multiple sequence alignment