Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   ACJ74_RS13925 Genome accession   NZ_CP011915
Coordinates   2797453..2798880 (-) Length   475 a.a.
NCBI ID   WP_000980557.1    Uniprot ID   -
Organism   Escherichia coli strain PSUO2     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2792453..2803880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJ74_RS13895 hisL 2793037..2793087 (-) 51 WP_001364200.1 his operon leader peptide -
  ACJ74_RS13900 (ACJ74_13470) yefM 2793370..2793621 (+) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  ACJ74_RS13905 (ACJ74_13475) yoeB 2793618..2793872 (+) 255 WP_000767829.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  ACJ74_RS13910 (ACJ74_13480) yeeZ 2793955..2794779 (+) 825 WP_000754741.1 SDR family oxidoreductase -
  ACJ74_RS13915 (ACJ74_13485) yeeY 2794825..2795754 (+) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  ACJ74_RS26050 yoeI 2795969..2796031 (+) 63 WP_010723108.1 membrane protein YoeI -
  ACJ74_RS13920 (ACJ74_13490) plaP 2796021..2797379 (+) 1359 WP_000019194.1 putrescine/proton symporter PlaP -
  ACJ74_RS13925 (ACJ74_13495) sbcB 2797453..2798880 (-) 1428 WP_000980557.1 exodeoxyribonuclease I Machinery gene
  ACJ74_RS13930 (ACJ74_13500) dacD 2799089..2800255 (+) 1167 WP_001350336.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  ACJ74_RS13935 (ACJ74_13505) sbmC 2800374..2800847 (+) 474 WP_001105406.1 DNA gyrase inhibitor SbmC -
  ACJ74_RS13940 (ACJ74_13510) yeeA 2801045..2802103 (+) 1059 WP_001200890.1 FUSC family protein -
  ACJ74_RS13945 (ACJ74_13515) tmaR 2802274..2802603 (+) 330 WP_000450409.1 DUF496 family protein -
  ACJ74_RS13950 (ACJ74_13520) - 2802703..2803146 (-) 444 WP_001189435.1 EutP/PduV family microcompartment system protein -
  ACJ74_RS13955 (ACJ74_13525) pduU 2803151..2803501 (-) 351 WP_000211397.1 propanediol utilization microcompartment protein PduU -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54455.73 Da        Isoelectric Point: 5.4700

>NTDB_id=129834 ACJ74_RS13925 WP_000980557.1 2797453..2798880(-) (sbcB) [Escherichia coli strain PSUO2]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=129834 ACJ74_RS13925 WP_000980557.1 2797453..2798880(-) (sbcB) [Escherichia coli strain PSUO2]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583

Multiple sequence alignment