Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ACJ74_RS08510 Genome accession   NZ_CP011915
Coordinates   1676700..1677176 (-) Length   158 a.a.
NCBI ID   WP_001186726.1    Uniprot ID   -
Organism   Escherichia coli strain PSUO2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1671700..1682176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJ74_RS08465 (ACJ74_08185) - 1671755..1672738 (-) 984 WP_001331698.1 KpsF/GutQ family sugar-phosphate isomerase -
  ACJ74_RS08470 (ACJ74_08190) - 1673549..1673731 (-) 183 Protein_1546 IS110 family transposase -
  ACJ74_RS08475 (ACJ74_08195) - 1674061..1674630 (-) 570 WP_001290241.1 DUF4942 domain-containing protein -
  ACJ74_RS08480 (ACJ74_08200) - 1674727..1674924 (-) 198 WP_000839281.1 DUF957 domain-containing protein -
  ACJ74_RS08485 (ACJ74_08205) - 1674936..1675424 (-) 489 WP_000777541.1 DUF5983 family protein -
  ACJ74_RS08490 (ACJ74_08210) - 1675421..1675795 (-) 375 WP_000854753.1 TA system toxin CbtA family protein -
  ACJ74_RS08495 (ACJ74_08215) cbeA 1675885..1676253 (-) 369 WP_001278232.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  ACJ74_RS08505 (ACJ74_08225) - 1676416..1676637 (-) 222 WP_000692316.1 DUF987 domain-containing protein -
  ACJ74_RS08510 (ACJ74_08230) radC 1676700..1677176 (-) 477 WP_001186726.1 JAB domain-containing protein Machinery gene
  ACJ74_RS08515 (ACJ74_08235) - 1677192..1677677 (-) 486 WP_001520165.1 antirestriction protein -
  ACJ74_RS08520 (ACJ74_08240) - 1677732..1678550 (-) 819 WP_001520163.1 DUF932 domain-containing protein -
  ACJ74_RS08530 (ACJ74_08245) - 1678650..1678883 (-) 234 WP_001119729.1 DUF905 family protein -
  ACJ74_RS08535 (ACJ74_08250) - 1678962..1679417 (-) 456 WP_000581504.1 IrmA family protein -
  ACJ74_RS08540 (ACJ74_08255) - 1679493..1681970 (-) 2478 WP_001567261.1 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17673.32 Da        Isoelectric Point: 7.2020

>NTDB_id=129817 ACJ74_RS08510 WP_001186726.1 1676700..1677176(-) (radC) [Escherichia coli strain PSUO2]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=129817 ACJ74_RS08510 WP_001186726.1 1676700..1677176(-) (radC) [Escherichia coli strain PSUO2]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCTCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment