Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ACJ74_RS00690 Genome accession   NZ_CP011915
Coordinates   124465..124941 (-) Length   158 a.a.
NCBI ID   WP_001186726.1    Uniprot ID   -
Organism   Escherichia coli strain PSUO2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 119465..129941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJ74_RS00655 (ACJ74_00660) yjhU 121032..122018 (+) 987 WP_001534815.1 sugar-binding transcriptional regulator -
  ACJ74_RS00660 (ACJ74_00665) - 122059..123063 (-) 1005 WP_001519297.1 GRP family sugar transporter -
  ACJ74_RS00665 (ACJ74_00670) - 123167..123469 (-) 303 WP_001519296.1 class II aldolase/adducin family protein -
  ACJ74_RS25910 - 123477..123554 (-) 78 Protein_123 TA system toxin CbtA family protein -
  ACJ74_RS00675 (ACJ74_00675) - 123644..124012 (-) 369 WP_001519295.1 type IV toxin-antitoxin system YeeU family antitoxin -
  ACJ74_RS00685 (ACJ74_00685) - 124175..124396 (-) 222 WP_000692323.1 DUF987 domain-containing protein -
  ACJ74_RS00690 (ACJ74_00690) radC 124465..124941 (-) 477 WP_001186726.1 JAB domain-containing protein Machinery gene
  ACJ74_RS00695 (ACJ74_00695) - 124957..125430 (-) 474 WP_001519293.1 antirestriction protein -
  ACJ74_RS00700 (ACJ74_00700) - 125524..125769 (-) 246 WP_000680585.1 hypothetical protein -
  ACJ74_RS00705 (ACJ74_00705) - 125769..126589 (-) 821 Protein_129 DUF932 domain-containing protein -
  ACJ74_RS00720 (ACJ74_00710) - 126957..127445 (-) 489 Protein_130 hypothetical protein -
  ACJ74_RS00725 (ACJ74_00715) - 127800..128342 (-) 543 WP_001519289.1 hypothetical protein -
  ACJ74_RS00730 (ACJ74_00720) - 128475..129545 (-) 1071 WP_001519287.1 patatin-like phospholipase family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17673.32 Da        Isoelectric Point: 7.2020

>NTDB_id=129775 ACJ74_RS00690 WP_001186726.1 124465..124941(-) (radC) [Escherichia coli strain PSUO2]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=129775 ACJ74_RS00690 WP_001186726.1 124465..124941(-) (radC) [Escherichia coli strain PSUO2]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCGGAACACGGCCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment