Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   LG36_RS10800 Genome accession   NZ_CP009472
Coordinates   2228063..2229136 (-) Length   357 a.a.
NCBI ID   WP_080739890.1    Uniprot ID   -
Organism   Lactococcus lactis strain AI06     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2223063..2234136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG36_RS10755 (LG36_2054) - 2223202..2224011 (-) 810 WP_038602349.1 metal ABC transporter permease -
  LG36_RS10760 (LG36_2055) - 2224004..2224741 (-) 738 WP_021723055.1 metal ABC transporter ATP-binding protein -
  LG36_RS10765 (LG36_2056) - 2224918..2225760 (-) 843 WP_038602352.1 metal ABC transporter substrate-binding protein -
  LG36_RS10770 (LG36_2057) - 2225757..2226194 (-) 438 WP_021721874.1 zinc-dependent MarR family transcriptional regulator -
  LG36_RS10775 (LG36_2058) comGG 2226275..2226550 (-) 276 WP_021721873.1 hypothetical protein Machinery gene
  LG36_RS10780 (LG36_2059) comGF 2226598..2227044 (-) 447 WP_021721872.1 competence type IV pilus minor pilin ComGF Machinery gene
  LG36_RS10785 (LG36_2060) comGE 2227007..2227303 (-) 297 WP_038602356.1 competence type IV pilus minor pilin ComGE Machinery gene
  LG36_RS10790 (LG36_2061) comGD 2227275..2227706 (-) 432 WP_080651959.1 competence type IV pilus minor pilin ComGD Machinery gene
  LG36_RS10795 (LG36_2062) comGC 2227666..2228049 (-) 384 WP_080739889.1 competence type IV pilus major pilin ComGC Machinery gene
  LG36_RS10800 (LG36_2063) comGB 2228063..2229136 (-) 1074 WP_080739890.1 competence type IV pilus assembly protein ComGB Machinery gene
  LG36_RS10805 (LG36_2064) comGA 2229030..2229968 (-) 939 WP_038602362.1 competence type IV pilus ATPase ComGA Machinery gene

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 40374.52 Da        Isoelectric Point: 10.3132

>NTDB_id=129664 LG36_RS10800 WP_080739890.1 2228063..2229136(-) (comGB) [Lactococcus lactis strain AI06]
MSLGHQKIGIKKLISYLQMDISHLLKPRGKKLRLIKQAKLIQLMGNLLNSGFNLGEVINFLSLSKLVEKEFTLKMKEGLA
SGQSLSELLESLSFSKNVVTQLALVEVHGNLSGTMQLVELHLKKQLKVKNKLVEVATYPILLLIFLVGIMWGLKNYLLPQ
LNSGSNFATLLINHLPLVFFSFGAFIFLLTALSVTLFKRKSAIMNFTFLVKLPLIHSFIRLYLTAYFAREWGNLIAQGVE
LRQIINLMKKQKSRIFSEVGKNLDLELNAGRSFEQAVSKLALFLPELSLMIEYGAIKDKLGLELSLYADECWEQFFTKID
RLMQLIQPLVFVFVALMIILLYAAMLLPIYSNMGSGI

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=129664 LG36_RS10800 WP_080739890.1 2228063..2229136(-) (comGB) [Lactococcus lactis strain AI06]
TTGAGTCTTGGTCATCAGAAAATTGGAATAAAAAAATTGATCAGCTACTTACAAATGGATATCTCACATCTACTGAAGCC
AAGAGGGAAAAAATTAAGACTGATTAAACAAGCTAAACTTATCCAACTGATGGGAAATCTTTTGAATAGTGGATTTAATT
TAGGAGAAGTGATAAATTTCTTATCTTTATCAAAACTTGTGGAAAAAGAATTTACATTGAAAATGAAAGAAGGTCTCGCT
TCTGGTCAATCTTTATCAGAGCTTTTAGAAAGTCTTTCATTTTCTAAAAATGTGGTGACACAACTTGCTTTGGTAGAAGT
GCATGGTAACTTGTCAGGAACGATGCAATTAGTTGAACTTCATCTAAAAAAACAGCTTAAAGTTAAAAATAAATTAGTGG
AAGTTGCTACTTATCCAATATTATTATTAATTTTTCTGGTTGGAATTATGTGGGGCTTAAAAAATTATTTACTGCCACAA
CTCAATAGTGGCAGTAACTTTGCTACTCTATTGATTAATCATTTACCCTTAGTATTTTTTTCGTTTGGAGCTTTTATATT
TTTACTGACAGCTTTGTCAGTAACTCTTTTTAAACGAAAATCAGCAATAATGAATTTTACATTTCTTGTTAAATTACCTC
TGATTCATTCTTTTATCCGTTTATATTTAACAGCTTACTTTGCAAGAGAATGGGGAAATCTAATTGCTCAAGGTGTCGAA
TTACGTCAAATTATTAACTTAATGAAAAAACAAAAAAGTCGAATTTTTTCAGAAGTTGGCAAGAATCTTGATTTAGAATT
GAATGCTGGTCGGTCTTTTGAACAAGCTGTCAGTAAACTTGCACTTTTTTTACCCGAGCTCTCATTAATGATTGAATATG
GAGCTATTAAAGATAAATTAGGCTTAGAGCTTTCGCTTTATGCGGATGAATGTTGGGAACAATTTTTTACAAAGATAGAT
CGTTTAATGCAATTAATCCAACCTCTTGTTTTTGTTTTCGTAGCATTGATGATTATTTTGCTATATGCAGCTATGTTACT
CCCCATCTATTCAAATATGGGTTCAGGAATATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(41-159)

Type II secretion system (T2SS), protein F (T2SSF)

(227-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Lactococcus lactis subsp. cremoris KW2

82.991

95.518

0.793
  comYB Streptococcus gordonii str. Challis substr. CH1

53.372

95.518

0.51
  comYB Streptococcus mutans UA159

53.079

95.518

0.507
  comYB Streptococcus mutans UA140

53.079

95.518

0.507
  comGB/cglB Streptococcus pneumoniae TIGR4

51.642

93.838

0.485
  comGB/cglB Streptococcus pneumoniae D39

51.642

93.838

0.485
  comGB/cglB Streptococcus pneumoniae R6

51.642

93.838

0.485
  comGB/cglB Streptococcus pneumoniae Rx1

51.642

93.838

0.485
  comGB/cglB Streptococcus mitis SK321

51.045

93.838

0.479
  comGB/cglB Streptococcus mitis NCTC 12261

50.149

93.838

0.471

Multiple sequence alignment