Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   ABU16_RS17695 Genome accession   NZ_CP011882
Coordinates   3427431..3427841 (-) Length   136 a.a.
NCBI ID   WP_009967785.1    Uniprot ID   P42983
Organism   Bacillus subtilis strain TO-A JPC     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3422431..3432841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABU16_RS17660 (ABU16_3510) - 3422518..3422658 (+) 141 WP_003226124.1 sporulation histidine kinase inhibitor Sda -
  ABU16_RS17670 (ABU16_3511) yqeF 3422964..3423695 (-) 732 WP_003229964.1 SGNH/GDSL hydrolase family protein -
  ABU16_RS17675 (ABU16_3512) cwlH 3423947..3424699 (-) 753 WP_003229963.1 N-acetylmuramoyl-L-alanine amidase CwlH -
  ABU16_RS17680 (ABU16_3513) yqeD 3424886..3425512 (+) 627 WP_003229962.1 TVP38/TMEM64 family protein -
  ABU16_RS17685 (ABU16_3514) gnd 3425531..3426424 (-) 894 WP_003229961.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  ABU16_RS17690 (ABU16_3515) yqeB 3426676..3427398 (+) 723 WP_010886572.1 hypothetical protein -
  ABU16_RS17695 (ABU16_3516) nucA/comI 3427431..3427841 (-) 411 WP_009967785.1 sporulation-specific Dnase NucB Machinery gene
  ABU16_RS17700 - 3428037..3428384 (+) 348 Protein_3429 sigma-70 family RNA polymerase sigma factor -
  ABU16_RS17705 (ABU16_3518) spoIVCA 3428415..3429875 (-) 1461 WP_223257626.1 site-specific DNA recombinase SpoIVCA -
  ABU16_RS22885 - 3429833..3430011 (-) 179 Protein_3431 hypothetical protein -
  ABU16_RS17710 (ABU16_3519) arsC 3430366..3430785 (-) 420 WP_004398596.1 thioredoxin-dependent arsenate reductase -
  ABU16_RS17715 (ABU16_3520) acr3 3430797..3431837 (-) 1041 WP_004398718.1 arsenite efflux transporter Acr3 -
  ABU16_RS17720 (ABU16_3521) yqcK 3431860..3432300 (-) 441 WP_003229954.1 ArsI/CadI family heavy metal resistance metalloenzyme -
  ABU16_RS17725 (ABU16_3522) arsR 3432361..3432678 (-) 318 WP_004399122.1 arsenical resistance operon transcriptional regulator ArsR -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 14967.97 Da        Isoelectric Point: 5.1853

>NTDB_id=129663 ABU16_RS17695 WP_009967785.1 3427431..3427841(-) (nucA/comI) [Bacillus subtilis strain TO-A JPC]
MKKWMAGLFLAAAVLLCLMVPQQIQGASSYDKVLYFPLSRYPETGSHIRDAIAEGHPDICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTRVLFIVQ

Nucleotide


Download         Length: 411 bp        

>NTDB_id=129663 ABU16_RS17695 WP_009967785.1 3427431..3427841(-) (nucA/comI) [Bacillus subtilis strain TO-A JPC]
ATGAAAAAATGGATGGCAGGCCTGTTTCTTGCTGCAGCAGTTCTTCTTTGTTTAATGGTTCCGCAACAGATCCAAGGCGC
ATCTTCGTATGACAAAGTGTTATATTTTCCGCTGTCTCGTTATCCGGAAACCGGCAGTCATATTAGGGATGCGATTGCAG
AGGGACATCCAGATATTTGTACCATTGACAGAGATGGAGCAGACAAAAGGCGGGAGGAATCTTTAAAGGGAATCCCGACC
AAGCCGGGCTATGACCGGGATGAGTGGCCGATGGCGGTCTGCGAGGAAGGCGGTGCAGGGGCTGATGTCCGATATGTGAC
GCCTTCTGATAATCGCGGCGCCGGCTCGTGGGTAGGGAATCAAATGAGCAGCTATCCTGACGGTACCAGAGTGCTGTTTA
TTGTGCAGTAG

Domains

Predicted by InterProScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(40-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P42983

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

62.609

84.559

0.529

Multiple sequence alignment