Detailed information NTG0129663

Bioinformatically predicted

Overview

• Name: comGC
• Type: Machinery gene
• Locus tag: LG36_RS10795
• Genome accession: NZ_CP009472
• Coordinates: 2227666..2228049 (-)
• Length: 127 a.a.
• NCBI ID: WP_080739889.1
• Uniprot ID: -
• Organism: Lactococcus lactis strain AI06
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2222666..2233049

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LG36_RS10755 (LG36_2054)	-	2223202..2224011 (-)	810	WP_038602349.1	metal ABC transporter permease	-
LG36_RS10760 (LG36_2055)	-	2224004..2224741 (-)	738	WP_021723055.1	metal ABC transporter ATP-binding protein	-
LG36_RS10765 (LG36_2056)	-	2224918..2225760 (-)	843	WP_038602352.1	metal ABC transporter substrate-binding protein	-
LG36_RS10770 (LG36_2057)	-	2225757..2226194 (-)	438	WP_021721874.1	zinc-dependent MarR family transcriptional regulator	-
LG36_RS10775 (LG36_2058)	comGG	2226275..2226550 (-)	276	WP_021721873.1	hypothetical protein	Machinery gene
LG36_RS10780 (LG36_2059)	comGF	2226598..2227044 (-)	447	WP_021721872.1	competence type IV pilus minor pilin ComGF	Machinery gene
LG36_RS10785 (LG36_2060)	comGE	2227007..2227303 (-)	297	WP_038602356.1	competence type IV pilus minor pilin ComGE	Machinery gene
LG36_RS10790 (LG36_2061)	comGD	2227275..2227706 (-)	432	WP_080651959.1	competence type IV pilus minor pilin ComGD	Machinery gene
LG36_RS10795 (LG36_2062)	comGC	2227666..2228049 (-)	384	WP_080739889.1	competence type IV pilus major pilin ComGC	Machinery gene
LG36_RS10800 (LG36_2063)	comGB	2228063..2229136 (-)	1074	WP_080739890.1	competence type IV pilus assembly protein ComGB	Machinery gene
LG36_RS10805 (LG36_2064)	comGA	2229030..2229968 (-)	939	WP_038602362.1	competence type IV pilus ATPase ComGA	Machinery gene

Sequence

Protein

• Length: 127 a.a.
• Molecular weight: 14811.42 Da
• Isoelectric Point: 8.4538

>NTDB_id=129663 LG36_RS10795 WP_080739889.1 2227666..2228049(-) (comGC) [Lactococcus lactis strain AI06]
MERTKKFILKKIQKIFLFVKICEKKCRQKELKAFTLIEMLIVLAIISILILLFVPNLIKEKSQVQKTGEAAVVKVVESQA
QLYEIDHDDEKPTLSELLSAGMITQKQISAYDNYYDQNKNEERNFND

Nucleotide

• Length: 384 bp

>NTDB_id=129663 LG36_RS10795 WP_080739889.1 2227666..2228049(-) (comGC) [Lactococcus lactis strain AI06]
ATGGAAAGAACAAAGAAGTTTATTTTAAAGAAAATACAAAAAATATTTTTATTCGTTAAAATTTGTGAAAAAAAATGCCG
TCAGAAAGAGCTAAAAGCTTTTACTTTGATAGAGATGTTAATTGTACTAGCTATTATTAGTATTTTGATATTACTATTTG
TTCCAAATTTAATTAAAGAAAAATCACAAGTTCAAAAAACTGGAGAAGCGGCAGTTGTGAAAGTAGTAGAAAGTCAAGCT
CAACTTTATGAGATAGATCATGATGATGAGAAGCCGACTCTGTCAGAATTGCTCAGCGCTGGGATGATTACTCAAAAACA
AATTTCTGCTTACGATAATTACTATGATCAGAATAAAAATGAAGAACGAAATTTTAATGACTAG

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (32-52)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGC	Lactococcus lactis subsp. cremoris KW2	80.172	91.339	0.732
comYC	Streptococcus mutans UA159	55.446	79.528	0.441
comYC	Streptococcus mutans UA140	55.446	79.528	0.441
comYC	Streptococcus gordonii str. Challis substr. CH1	56.566	77.953	0.441
comGC/cglC	Streptococcus mitis SK321	54.455	79.528	0.433
comGC/cglC	Streptococcus pneumoniae TIGR4	52.475	79.528	0.417
comGC/cglC	Streptococcus pneumoniae Rx1	52.475	79.528	0.417
comGC/cglC	Streptococcus pneumoniae D39	52.475	79.528	0.417
comGC/cglC	Streptococcus pneumoniae R6	52.475	79.528	0.417
comGC/cglC	Streptococcus mitis NCTC 12261	56.18	70.079	0.394
comYC	Streptococcus suis isolate S10	56.818	69.291	0.394