Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   ABU16_RS11545 Genome accession   NZ_CP011882
Coordinates   2225320..2226456 (+) Length   378 a.a.
NCBI ID   WP_015252291.1    Uniprot ID   -
Organism   Bacillus subtilis strain TO-A JPC     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2220320..2231456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABU16_RS11525 (ABU16_2270) uxaA 2220770..2222263 (+) 1494 WP_032730467.1 altronate dehydratase family protein -
  ABU16_RS11530 (ABU16_2271) yjnA 2222302..2223066 (-) 765 WP_003245643.1 sulfite exporter TauE/SafE family protein -
  ABU16_RS11535 (ABU16_2272) yjoA 2223291..2223755 (-) 465 WP_032730469.1 DinB family protein -
  ABU16_RS11540 (ABU16_2273) yjoB 2223904..2225175 (+) 1272 WP_003245490.1 ATPase YjoB -
  ABU16_RS11545 (ABU16_2274) rapC 2225320..2226456 (+) 1137 WP_015252291.1 response regulator aspartate phosphatase RapA Regulator
  ABU16_RS11550 (ABU16_2275) phrA 2226446..2226580 (+) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  ABU16_RS11555 (ABU16_2276) yjpA 2226611..2226868 (-) 258 WP_003232731.1 YciI family protein -
  ABU16_RS11560 (ABU16_2277) xlyB 2226988..2227941 (+) 954 WP_032721375.1 N-acetylmuramoyl-L-alanine amidase -
  ABU16_RS11565 (ABU16_2278) yjqA 2227981..2228358 (-) 378 WP_014476529.1 PH domain-containing protein -
  ABU16_RS11570 (ABU16_2279) pghB 2228463..2229065 (+) 603 WP_015252289.1 poly-gamma-glutamate hydrolase family protein -
  ABU16_RS11575 (ABU16_2280) xpdC 2229142..2229978 (+) 837 WP_003245071.1 manganese catalase family protein -
  ABU16_RS11580 (ABU16_2281) xkdA 2230014..2230610 (-) 597 WP_019712456.1 ImmA/IrrE family metallo-endopeptidase -
  ABU16_RS11585 (ABU16_2282) xre 2230773..2231114 (-) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45046.23 Da        Isoelectric Point: 4.7218

>NTDB_id=129614 ABU16_RS11545 WP_015252291.1 2225320..2226456(+) (rapC) [Bacillus subtilis strain TO-A JPC]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=129614 ABU16_RS11545 WP_015252291.1 2225320..2226456(+) (rapC) [Bacillus subtilis strain TO-A JPC]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCACCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAG
TTTTCAGAATTGTTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAATTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCAGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AAGAAGGCAATCCCCGCCTGATCAGTTCCGCCCTGTATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTTGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCGGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.947

99.471

0.447
  rapF Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.418