Detailed information NTG0129599

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: LA59_RS14850
• Genome accession: NZ_CP009467
• Coordinates: 3238904..3239887 (-)
• Length: 327 a.a.
• NCBI ID: WP_069687472.1
• Uniprot ID: -
• Organism: Vibrio harveyi strain ATCC 33843 (392 [MAV])
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3233904..3244887

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LA59_RS14835 (LA59_14825)	recA	3234436..3235479 (-)	1044	WP_050907766.1	recombinase RecA	Machinery gene
LA59_RS14840 (LA59_14830)	pncC	3235681..3236163 (-)	483	WP_050907765.1	nicotinamide-nucleotide amidase	-
LA59_RS14845 (LA59_14835)	mutS	3236249..3238810 (+)	2562	WP_069687471.1	DNA mismatch repair protein MutS	-
LA59_RS14850 (LA59_14840)	rpoS	3238904..3239887 (-)	984	WP_069687472.1	RNA polymerase sigma factor RpoS	Regulator
LA59_RS14855 (LA59_14845)	-	3239968..3240891 (-)	924	WP_009698767.1	peptidoglycan DD-metalloendopeptidase family protein	-
LA59_RS14860 (LA59_14850)	-	3240906..3241532 (-)	627	WP_017189122.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
LA59_RS14865 (LA59_14855)	surE	3241532..3242308 (-)	777	WP_009698768.1	5'/3'-nucleotidase SurE	-
LA59_RS14870 (LA59_14860)	truD	3242308..3243351 (-)	1044	WP_038899661.1	tRNA pseudouridine(13) synthase TruD	-
LA59_RS14875 (LA59_14865)	ispF	3243397..3243873 (-)	477	WP_009698769.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
LA59_RS14880 (LA59_14870)	ispD	3243888..3244598 (-)	711	WP_050907763.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
LA59_RS14885 (LA59_14875)	ftsB	3244600..3244881 (-)	282	WP_005452106.1	cell division protein FtsB	-

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 37210.02 Da
• Isoelectric Point: 4.7232

>NTDB_id=129599 LA59_RS14850 WP_069687472.1 3238904..3239887(-) (rpoS) [Vibrio harveyi strain ATCC 33843 (392 [MAV])]
MSISNTVTKVEEFEYDNAQSEGISNGLEKPSNGTKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRG
DEAARKRMSESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSDP
EVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNMEN
LFNVEDD

Nucleotide

• Length: 984 bp

>NTDB_id=129599 LA59_RS14850 WP_069687472.1 3238904..3239887(-) (rpoS) [Vibrio harveyi strain ATCC 33843 (392 [MAV])]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTCGAATATGATAATGCACAATCGGAAGGCATTTCTAACGGACT
TGAAAAACCATCTAACGGAACCAAAACAGCAGCACGCGAAGAGTTTGATGCGAGCAGCAAGAGCCTAGACGCGACTCAGC
TTTACCTAGGTGAAATTGGTTTCTCACCTCTACTTACTGCAGAAGAAGAAGTACTTTATGCACGACGTGCACTGCGTGGC
GATGAAGCCGCTCGCAAACGCATGAGCGAAAGTAACTTGCGTCTTGTAGTGAAGATCTCTCGCCGATACAGCAATCGTGG
TCTTGCGCTTCTTGATCTTATTGAAGAAGGTAACTTAGGTTTGATCCGTGCGGTCGAGAAGTTTGATCCAGAACGAGGCT
TCCGTTTCTCAACTTACGCGACGTGGTGGATTCGCCAAACGATCGAACGTGCGTTGATGAACCAAACTCGTACAATCCGT
CTGCCAATTCATGTGGTTAAAGAGCTGAACATTTATCTGCGTACAGCGCGTGAACTTTCTCAGAAGCTCGACCATGAACC
AACAGCAGAAGAGATTGCTGCACAGTTAGATATCCCAGTAGAAGACGTAAGTAAAATGCTTCGCCTTAACGAGCGTATTA
GCTCTGTCGATACTCCAATCGGTGGTGACGGCGAGAAAGCGTTACTGGATATTATTCCTGATGCAAACAACTCGGATCCT
GAAGTTTCCACTCAAGACGATGACATCAAATCTTCATTGATCCATTGGCTAGAAGAGCTGAATCCAAAACAGAAAGAAGT
GCTGGCACGTCGTTTTGGTCTGCTTGGTTATGAGCCATCAACGCTTGAAGAAGTGGGACGTGAAATTGGTTTAACACGCG
AACGTGTTCGCCAGATCCAAGTGGAAGGCTTACGTCGACTACGCGAGATCTTGATTAAACAAGGTCTGAACATGGAAAAC
TTGTTCAACGTAGAAGACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (168-241)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (50-83)

• Sigma-70, region 4 (Sigma70_r4) (256-309)

• Sigma-70 region 2 (Sigma70_r2) (90-157)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.533	100	0.853