Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   LA59_RS14720 Genome accession   NZ_CP009467
Coordinates   3216656..3217174 (-) Length   172 a.a.
NCBI ID   WP_017189128.1    Uniprot ID   -
Organism   Vibrio harveyi strain ATCC 33843 (392 [MAV])     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3211656..3222174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA59_RS14695 (LA59_14685) rimM 3211709..3212257 (-) 549 WP_005446245.1 ribosome maturation factor RimM -
  LA59_RS14700 (LA59_14690) rpsP 3212286..3212534 (-) 249 WP_004410028.1 30S ribosomal protein S16 -
  LA59_RS14705 (LA59_14695) ffh 3212745..3214127 (-) 1383 WP_005446242.1 signal recognition particle protein -
  LA59_RS14710 (LA59_14700) - 3214341..3215135 (+) 795 WP_005446240.1 inner membrane protein YpjD -
  LA59_RS14715 (LA59_14705) - 3215290..3216564 (+) 1275 WP_005446238.1 HlyC/CorC family transporter -
  LA59_RS14720 (LA59_14710) luxS 3216656..3217174 (-) 519 WP_017189128.1 S-ribosylhomocysteine lyase Regulator
  LA59_RS14725 (LA59_14715) - 3217261..3217866 (-) 606 WP_029790340.1 hypothetical protein -
  LA59_RS14730 (LA59_14720) gshA 3217886..3219454 (-) 1569 WP_017817672.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19053.86 Da        Isoelectric Point: 5.2440

>NTDB_id=129596 LA59_RS14720 WP_017189128.1 3216656..3217174(-) (luxS) [Vibrio harveyi strain ATCC 33843 (392 [MAV])]
MPLLDSFTVDHTRMHAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWVAAMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAKNILKAGVAVNKNDDLA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=129596 LA59_RS14720 WP_017189128.1 3216656..3217174(-) (luxS) [Vibrio harveyi strain ATCC 33843 (392 [MAV])]
ATGCCTTTATTAGACAGTTTTACCGTAGACCACACACGTATGCATGCGCCAGCAGTTCGTGTGGCTAAAACGATGCAAAC
TCCAAAGGGAGACACCATCACAGTATTTGACTTACGTTTTACTGCACCGAACAAAGACATCCTTTCTGAGAAGGGAATTC
ACACTTTAGAGCATTTGTACGCTGGCTTTATGCGCAACCACTTAAACGGTGATAGCGTTGAGATCATCGATATCTCACCA
ATGGGTTGCCGTACCGGTTTCTACATGAGCTTGATTGGTACGCCTTCAGAGCAGCAAGTGGCGGATGCTTGGGTTGCAGC
AATGGAAGACGTATTGAAAGTAGAAAGTCAAAACAAGATCCCTGAGCTGAATGAATACCAATGTGGTACAGCTGCAATGC
ACTCTTTAGATGAGGCAAAGCAAATCGCGAAAAACATTCTAAAAGCGGGCGTTGCAGTTAATAAGAATGATGATTTGGCA
CTGCCAGAATCTATGCTGAAAGAGTTGCGTATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

85.965

99.419

0.855

Multiple sequence alignment