Detailed information NTG0129595

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LA59_RS14665
• Genome accession: NZ_CP009467
• Coordinates: 3207667..3208536 (+)
• Length: 289 a.a.
• NCBI ID: WP_069687468.1
• Uniprot ID: -
• Organism: Vibrio harveyi strain ATCC 33843 (392 [MAV])
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3202667..3213536

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LA59_RS14640 (LA59_14630)	nadC	3203096..3203983 (+)	888	WP_005446259.1	carboxylating nicotinate-nucleotide diphosphorylase	-
LA59_RS14650 (LA59_14640)	pilA	3204248..3204652 (+)	405	WP_050936251.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
LA59_RS14655 (LA59_14645)	pilB	3204652..3206337 (+)	1686	WP_049535467.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LA59_RS14660 (LA59_14650)	pilC	3206371..3207594 (+)	1224	WP_005446256.1	type II secretion system F family protein	Machinery gene
LA59_RS14665 (LA59_14655)	pilD	3207667..3208536 (+)	870	WP_069687468.1	A24 family peptidase	Machinery gene
LA59_RS14670 (LA59_14660)	coaE	3208537..3209151 (+)	615	WP_017189130.1	dephospho-CoA kinase	-
LA59_RS14675 (LA59_14665)	zapD	3209179..3209919 (+)	741	WP_005446251.1	cell division protein ZapD	-
LA59_RS14680 (LA59_14670)	yacG	3209982..3210176 (+)	195	WP_005446249.1	DNA gyrase inhibitor YacG	-
LA59_RS14685 (LA59_14675)	rplS	3210543..3210896 (-)	354	WP_005379971.1	50S ribosomal protein L19	-
LA59_RS14690 (LA59_14680)	trmD	3210938..3211681 (-)	744	WP_005446247.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
LA59_RS14695 (LA59_14685)	rimM	3211709..3212257 (-)	549	WP_005446245.1	ribosome maturation factor RimM	-
LA59_RS14700 (LA59_14690)	rpsP	3212286..3212534 (-)	249	WP_004410028.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32566.76 Da
• Isoelectric Point: 7.5422

>NTDB_id=129595 LA59_RS14665 WP_069687468.1 3207667..3208536(+) (pilD) [Vibrio harveyi strain ATCC 33843 (392 [MAV])]
MEVFQYYPWLFVVFTAIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKETLTLSVPRSSCQQCGTHIRIR
DNIPVISWLLLKGKCHNCQSPISTRYPLIELLTAFCSGFIAFHFGFSYFTVALVFFTFVLIAATFIDLDTMLLPDQLTLP
LMWAGIALALAGISPVSLQDSIIGAMAGYLCLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLIQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGNQILNWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=129595 LA59_RS14665 WP_069687468.1 3207667..3208536(+) (pilD) [Vibrio harveyi strain ATCC 33843 (392 [MAV])]
ATGGAAGTATTCCAGTACTACCCATGGCTATTCGTTGTATTTACCGCTATTTTTGGTTTGATCGTGGGTAGTTTCCTCAA
CGTAGTTATTTACCGTTTACCTAAGATCATGGAACTAGAATGGCGACGCGAGTGTGCTGAATCATTCCCTGAATACAAGA
TCGAGCCACCAAAAGAGACATTAACCTTAAGCGTCCCACGTTCATCTTGTCAGCAATGCGGTACACATATCCGCATTAGA
GACAATATCCCTGTGATTAGTTGGCTATTACTAAAAGGTAAATGCCACAACTGCCAATCACCTATCAGTACCCGTTACCC
TCTTATCGAACTGCTTACCGCTTTTTGTTCGGGTTTTATCGCTTTTCATTTCGGTTTTAGCTACTTCACTGTGGCGCTGG
TTTTCTTTACCTTTGTATTGATTGCTGCCACATTTATCGACCTTGATACCATGTTGCTGCCAGACCAACTCACACTACCA
TTGATGTGGGCGGGTATTGCTCTTGCTCTTGCCGGTATCAGCCCTGTGAGTCTTCAAGATTCTATTATTGGAGCAATGGC
AGGTTACTTATGTCTTTGGAGTGTTTATTGGTTATTCAAACTCCTCACAGGCAAAGAGGGAATGGGCTATGGCGACTTTA
AACTCCTTGCTGCATTAGGAGCTTGGCTGGGCTGGCAATCTCTGCCGATGATCATTTTACTTTCTTCGGTAGTAGGCGTC
ATTTTTGGTCTTATCCAGCTGCGCTTACAAAAGCAAGGTATCGAAAAAGCCTTTCCTTTTGGTCCTTACCTTGCAATTGC
AGGATGGGTGAGCCTAATTTGGGGCAATCAAATCCTCAACTGGTACTTTACGTCGATTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	96.886	100	0.969
pilD	Vibrio cholerae strain A1552	73.958	99.654	0.737
pilD	Acinetobacter baumannii D1279779	52.768	93.772	0.495
pilD	Acinetobacter nosocomialis M2	52.399	93.772	0.491
pilD	Neisseria gonorrhoeae MS11	45.652	95.502	0.436