Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   ABU16_RS07835 Genome accession   NZ_CP011882
Coordinates   1521087..1521728 (+) Length   213 a.a.
NCBI ID   WP_003234184.1    Uniprot ID   -
Organism   Bacillus subtilis strain TO-A JPC     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1516087..1526728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABU16_RS07805 (ABU16_1536) ydfE 1517276..1517899 (-) 624 WP_029317354.1 flavin reductase family protein -
  ABU16_RS07810 (ABU16_1537) ydfF 1517989..1518669 (+) 681 WP_003244115.1 winged helix-turn-helix domain-containing protein -
  ABU16_RS07815 (ABU16_1538) ydfG 1518749..1519192 (-) 444 WP_014478970.1 carboxymuconolactone decarboxylase family protein -
  ABU16_RS21625 - 1519278..1519457 (-) 180 WP_010886421.1 hypothetical protein -
  ABU16_RS21630 (ABU16_1539) - 1519454..1519603 (-) 150 WP_003234189.1 hypothetical protein -
  ABU16_RS07830 (ABU16_1540) ydfH 1519871..1521094 (+) 1224 WP_015252722.1 two-component system sensor histidine kinase YdfH -
  ABU16_RS07835 (ABU16_1541) vraR 1521087..1521728 (+) 642 WP_003234184.1 two-component system response regulator YdfI Regulator
  ABU16_RS07840 (ABU16_1542) ydfJ 1521844..1524018 (+) 2175 WP_003243548.1 MMPL family transporter -
  ABU16_RS07845 (ABU16_1544) cesA 1524430..1525332 (-) 903 WP_003234180.1 carboxylesterase -
  ABU16_RS07850 (ABU16_1545) ydfK 1525535..1526182 (-) 648 WP_003234178.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23985.98 Da        Isoelectric Point: 5.4183

>NTDB_id=129584 ABU16_RS07835 WP_003234184.1 1521087..1521728(+) (vraR) [Bacillus subtilis strain TO-A JPC]
MNKVLIVDDHLVVREGLKLLIETNDQYTIIGEAENGKVAVRLADELEPDIILMDLYMPEMSGLEAIKQIKEKHDIPIIIL
TTYNEDHLMIEGIELGAKGYLLKDTSSETLFHTMDAAIRGNVLLQPDILKRLQEIQFERMKKQRNETQLTEKEVIVLKAI
AKGLKSKAIAFDLGVSERTVKSRLTSIYNKLGANSRTEAVTIAMQKGILTIDN

Nucleotide


Download         Length: 642 bp        

>NTDB_id=129584 ABU16_RS07835 WP_003234184.1 1521087..1521728(+) (vraR) [Bacillus subtilis strain TO-A JPC]
ATGAATAAGGTTTTAATCGTTGATGACCATCTTGTCGTGAGGGAAGGTCTGAAGCTTTTAATTGAAACGAATGATCAATA
CACCATTATAGGAGAGGCGGAAAATGGAAAAGTCGCAGTCCGTCTTGCAGATGAATTAGAACCGGATATCATTCTGATGG
ATTTGTATATGCCGGAGATGAGCGGGTTAGAGGCCATTAAACAAATAAAAGAAAAACACGATATCCCCATCATTATTTTG
ACTACATATAATGAAGATCACTTAATGATCGAAGGGATTGAATTAGGAGCGAAAGGATATCTGTTAAAGGATACGAGTTC
AGAAACCCTTTTTCACACAATGGATGCAGCGATCAGAGGAAATGTGCTGTTGCAGCCTGATATCCTTAAACGTCTGCAAG
AAATCCAATTTGAGCGGATGAAAAAGCAGCGCAATGAGACGCAGCTGACAGAAAAGGAAGTCATTGTTCTAAAAGCAATT
GCTAAAGGTCTTAAAAGCAAAGCGATTGCCTTTGATTTGGGCGTCTCTGAGCGAACAGTAAAGTCCAGATTAACGTCCAT
TTACAATAAATTAGGCGCGAATTCAAGAACTGAGGCAGTAACGATTGCCATGCAAAAAGGTATTCTGACAATAGACAACT
AA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

36.493

99.061

0.362

Multiple sequence alignment