Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   ABU16_RS05170 Genome accession   NZ_CP011882
Coordinates   1012713..1012943 (+) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis strain TO-A JPC     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1007713..1017943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABU16_RS05135 (ABU16_1042) ridA 1007878..1008255 (+) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -
  ABU16_RS05140 (ABU16_1043) spoVG 1008449..1008742 (+) 294 WP_003218346.1 septation regulator SpoVG -
  ABU16_RS05150 (ABU16_1045) glmU 1008935..1010305 (+) 1371 WP_003226732.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  ABU16_RS05155 (ABU16_1046) prs 1010328..1011281 (+) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  ABU16_RS05160 (ABU16_1047) ctc 1011366..1011980 (+) 615 WP_003243443.1 50S ribosomal protein L25/general stress protein Ctc -
  ABU16_RS05165 (ABU16_1048) pth 1012087..1012653 (+) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  ABU16_RS05170 (ABU16_1049) subA/fin 1012713..1012943 (+) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  ABU16_RS05175 (ABU16_1050) mfd 1013013..1016546 (+) 3534 WP_003226723.1 transcription-repair coupling factor -
  ABU16_RS05180 (ABU16_1051) spoVT 1016682..1017218 (+) 537 WP_003218365.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=129566 ABU16_RS05170 WP_003243417.1 1012713..1012943(+) (subA/fin) [Bacillus subtilis strain TO-A JPC]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=129566 ABU16_RS05170 WP_003243417.1 1012713..1012943(+) (subA/fin) [Bacillus subtilis strain TO-A JPC]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGATTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment