Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | AB406_RS03690 | Genome accession | NZ_CP011859 |
| Coordinates | 756192..758783 (-) | Length | 863 a.a. |
| NCBI ID | WP_079206981.1 | Uniprot ID | - |
| Organism | Riemerella anatipestifer strain HXb2 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 751192..763783
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB406_RS03675 (AB406_0746) | - | 752122..752922 (+) | 801 | WP_140222297.1 | hypothetical protein | - |
| AB406_RS03680 (AB406_0747) | - | 752951..754354 (+) | 1404 | WP_014937986.1 | FISUMP domain-containing protein | - |
| AB406_RS03685 (AB406_0748) | - | 754584..756110 (+) | 1527 | WP_079206979.1 | GH3 auxin-responsive promoter family protein | - |
| AB406_RS03690 (AB406_0749) | clpC | 756192..758783 (-) | 2592 | WP_079206981.1 | ATP-dependent chaperone ClpB | Regulator |
| AB406_RS03695 (AB406_0750) | pth | 759054..759617 (+) | 564 | WP_079206983.1 | aminoacyl-tRNA hydrolase | - |
| AB406_RS03700 (AB406_0751) | - | 759627..760751 (-) | 1125 | WP_079206985.1 | hypothetical protein | - |
| AB406_RS03705 (AB406_0752) | - | 760736..761626 (-) | 891 | WP_260310052.1 | phosphatase PAP2 family protein | - |
| AB406_RS03710 (AB406_0753) | - | 761744..763348 (-) | 1605 | WP_079206989.1 | SulP family inorganic anion transporter | - |
Sequence
Protein
Download Length: 863 a.a. Molecular weight: 97476.24 Da Isoelectric Point: 5.1523
>NTDB_id=129506 AB406_RS03690 WP_079206981.1 756192..758783(-) (clpC) [Riemerella anatipestifer strain HXb2]
MNLNQFTVKSQEVIQKAQQLAMAFGHQSIEPQHILEGIFESDDTISSFLLKKSEADATLIRERNRQNLETLPKVEGGSLY
LSQAGNRVLLEAPNLAKKMGDEYVTIEHLWLALIEVSSSVSSLLKDMGVTKALLEAGIKELRKGSKATSASSEETYQSLS
KYAKNFNELAAEGKLDPVIGRDEEIRRVLQILSRRTKNNPILIGEPGVGKTAIAEGIAHRIISGDVPENLMDKTLYSLDM
GALVAGAKYKGEFEERLKSVVNEVTKSDGQIILFIDEIHTLVGAGGGEGAMDAANILKPALARGELRAIGATTLNEYQKY
FEKDKALERRFQKVMVEEPDTESAISILRGIKDKYEFHHKIRIKDEAIIAAVEMSQRYISDRFLPDKAIDLIDEASSKLR
MEINSKPEELDILDRKLMQLEIELAAISREGNQTKIDHLKEDIAKVTEERNEINAKWLQEKQKSEDLTQIKKDIEALKLE
AERAQRLGDYAKVSEIQYGKLREKEEDLRKIELLMQNNQNELIKEEVTAEHISEVISKWTGIPVTKLLQSEREKLLHLED
ELHKRVVGQEEAIEAVANAIRRNRAGLNDEKKPIGSFLFLGTTGVGKTELAKALAEFLFDDENNMTRIDMSEYQERHSVS
RLVGAPPGYVGYDEGGQLTEAVRRRPYSVVLLDEIEKAHPDVFNTLLQVLDDGRLTDNKGRVVNFKNTIVIMTSNLGSHI
IQENFEGLTEENQEEIVSKTKEEVFGVLKQSLRPEFINRIDEVVLFQPLNKKEIGKIIQYLLRGFNKMLEKKNIILTSTE
DALNYIREKGYDPSFGARPLKRLLQQEVLNQLSKEILAGNVNDGDRIILDYFKESGLVFRQAE
MNLNQFTVKSQEVIQKAQQLAMAFGHQSIEPQHILEGIFESDDTISSFLLKKSEADATLIRERNRQNLETLPKVEGGSLY
LSQAGNRVLLEAPNLAKKMGDEYVTIEHLWLALIEVSSSVSSLLKDMGVTKALLEAGIKELRKGSKATSASSEETYQSLS
KYAKNFNELAAEGKLDPVIGRDEEIRRVLQILSRRTKNNPILIGEPGVGKTAIAEGIAHRIISGDVPENLMDKTLYSLDM
GALVAGAKYKGEFEERLKSVVNEVTKSDGQIILFIDEIHTLVGAGGGEGAMDAANILKPALARGELRAIGATTLNEYQKY
FEKDKALERRFQKVMVEEPDTESAISILRGIKDKYEFHHKIRIKDEAIIAAVEMSQRYISDRFLPDKAIDLIDEASSKLR
MEINSKPEELDILDRKLMQLEIELAAISREGNQTKIDHLKEDIAKVTEERNEINAKWLQEKQKSEDLTQIKKDIEALKLE
AERAQRLGDYAKVSEIQYGKLREKEEDLRKIELLMQNNQNELIKEEVTAEHISEVISKWTGIPVTKLLQSEREKLLHLED
ELHKRVVGQEEAIEAVANAIRRNRAGLNDEKKPIGSFLFLGTTGVGKTELAKALAEFLFDDENNMTRIDMSEYQERHSVS
RLVGAPPGYVGYDEGGQLTEAVRRRPYSVVLLDEIEKAHPDVFNTLLQVLDDGRLTDNKGRVVNFKNTIVIMTSNLGSHI
IQENFEGLTEENQEEIVSKTKEEVFGVLKQSLRPEFINRIDEVVLFQPLNKKEIGKIIQYLLRGFNKMLEKKNIILTSTE
DALNYIREKGYDPSFGARPLKRLLQQEVLNQLSKEILAGNVNDGDRIILDYFKESGLVFRQAE
Nucleotide
Download Length: 2592 bp
>NTDB_id=129506 AB406_RS03690 WP_079206981.1 756192..758783(-) (clpC) [Riemerella anatipestifer strain HXb2]
ATGAATTTAAATCAGTTTACAGTAAAATCACAAGAGGTGATTCAGAAGGCACAGCAGTTAGCTATGGCGTTCGGGCACCA
AAGTATAGAACCTCAACATATTTTAGAGGGTATTTTTGAAAGCGATGATACCATTTCTAGCTTTTTACTAAAAAAATCAG
AAGCAGATGCTACTCTCATCAGAGAGCGTAACAGGCAAAATTTAGAAACTCTTCCTAAGGTAGAAGGTGGTAGTTTGTAT
CTTTCCCAAGCAGGTAATAGAGTACTTTTGGAAGCTCCTAATTTGGCTAAAAAAATGGGAGATGAATATGTTACCATAGA
ACACCTTTGGTTGGCTTTAATAGAGGTTTCGTCTTCGGTATCTTCTTTACTTAAAGATATGGGAGTTACCAAGGCTTTGC
TAGAAGCAGGAATAAAAGAGCTTAGGAAAGGGAGTAAGGCTACTTCGGCGAGTTCGGAGGAAACTTATCAAAGTTTGAGC
AAATACGCTAAGAATTTTAATGAACTTGCTGCGGAGGGCAAACTAGACCCTGTGATTGGTAGAGATGAGGAAATTCGCCG
TGTGTTGCAAATTCTTTCTAGGAGAACCAAAAACAACCCTATCCTTATAGGAGAGCCTGGGGTTGGTAAAACGGCTATTG
CTGAAGGGATTGCACACAGGATTATTTCGGGAGATGTACCAGAAAACCTAATGGATAAAACGCTTTATTCACTAGATATG
GGGGCGTTGGTTGCGGGAGCTAAATACAAAGGCGAGTTTGAAGAGCGTCTGAAATCTGTGGTTAACGAGGTAACGAAATC
AGATGGACAAATCATACTTTTTATAGATGAAATACATACTCTGGTAGGTGCTGGAGGTGGAGAAGGAGCCATGGATGCGG
CTAATATCCTAAAACCAGCTTTGGCTAGAGGAGAGCTTAGAGCCATAGGAGCAACGACGCTTAACGAGTATCAGAAATAC
TTTGAAAAAGATAAAGCATTGGAGCGTCGTTTCCAGAAAGTAATGGTGGAAGAGCCAGATACGGAGTCGGCAATTTCTAT
CTTGAGAGGGATTAAGGATAAGTACGAGTTTCATCATAAAATCAGGATTAAAGATGAAGCTATTATCGCTGCAGTGGAAA
TGTCTCAGCGTTATATATCAGACCGTTTTCTTCCAGATAAAGCTATTGATTTGATAGACGAGGCTTCTTCTAAACTAAGA
ATGGAAATCAATTCTAAGCCTGAAGAGTTGGATATTCTAGATAGAAAATTGATGCAGCTAGAGATAGAACTTGCTGCAAT
TTCTAGAGAAGGTAATCAAACTAAAATAGACCACCTTAAAGAGGATATAGCTAAGGTCACCGAGGAAAGAAACGAAATCA
ATGCAAAGTGGTTACAAGAAAAGCAAAAGTCTGAAGATTTAACTCAGATTAAAAAAGACATTGAGGCGTTGAAGTTAGAA
GCAGAAAGGGCTCAAAGATTAGGCGACTATGCTAAGGTTTCAGAAATTCAGTATGGTAAATTAAGGGAAAAGGAAGAGGA
TCTTCGTAAAATAGAACTCCTGATGCAGAATAACCAAAATGAACTTATTAAAGAAGAGGTAACGGCAGAGCATATTTCCG
AAGTTATTTCTAAATGGACGGGGATTCCTGTCACTAAACTTCTGCAAAGCGAGAGAGAAAAATTACTTCACCTAGAAGAC
GAGCTTCACAAAAGAGTAGTGGGGCAAGAGGAGGCTATAGAAGCCGTGGCTAATGCTATCAGAAGAAATCGTGCAGGGCT
TAATGATGAGAAAAAACCAATTGGTTCATTCCTGTTTTTAGGAACTACGGGAGTAGGTAAAACCGAATTGGCAAAAGCAT
TAGCAGAGTTCCTATTTGATGATGAAAATAATATGACTCGTATTGATATGAGTGAATATCAAGAGCGTCATTCGGTGTCT
AGATTAGTGGGTGCTCCTCCAGGGTATGTAGGCTATGATGAAGGCGGACAACTTACGGAAGCGGTAAGAAGAAGACCTTA
TTCGGTAGTGCTTTTAGACGAAATAGAAAAGGCTCACCCTGATGTGTTTAATACTTTATTGCAGGTGTTAGACGACGGAA
GGCTTACGGATAATAAAGGTCGTGTTGTTAATTTCAAAAACACTATCGTGATTATGACTTCTAACTTGGGTTCTCATATT
ATTCAAGAAAATTTTGAAGGGCTTACAGAAGAAAATCAGGAGGAAATAGTTTCTAAAACTAAAGAGGAAGTTTTTGGAGT
GCTTAAACAGTCGTTGCGTCCAGAGTTTATCAATAGGATAGATGAGGTGGTGCTCTTCCAACCGCTTAATAAGAAAGAAA
TAGGTAAGATTATACAATACTTGCTTAGAGGCTTTAATAAGATGTTGGAAAAGAAAAATATCATTTTAACATCTACCGAA
GATGCATTAAACTACATTAGAGAGAAAGGTTATGATCCTTCGTTTGGGGCAAGACCGCTCAAGAGATTGTTGCAACAGGA
AGTGCTTAACCAGCTTTCTAAAGAAATTCTCGCAGGTAATGTGAATGATGGCGACCGCATTATTTTAGATTATTTCAAAG
AGAGTGGATTGGTATTTAGACAAGCAGAGTAG
ATGAATTTAAATCAGTTTACAGTAAAATCACAAGAGGTGATTCAGAAGGCACAGCAGTTAGCTATGGCGTTCGGGCACCA
AAGTATAGAACCTCAACATATTTTAGAGGGTATTTTTGAAAGCGATGATACCATTTCTAGCTTTTTACTAAAAAAATCAG
AAGCAGATGCTACTCTCATCAGAGAGCGTAACAGGCAAAATTTAGAAACTCTTCCTAAGGTAGAAGGTGGTAGTTTGTAT
CTTTCCCAAGCAGGTAATAGAGTACTTTTGGAAGCTCCTAATTTGGCTAAAAAAATGGGAGATGAATATGTTACCATAGA
ACACCTTTGGTTGGCTTTAATAGAGGTTTCGTCTTCGGTATCTTCTTTACTTAAAGATATGGGAGTTACCAAGGCTTTGC
TAGAAGCAGGAATAAAAGAGCTTAGGAAAGGGAGTAAGGCTACTTCGGCGAGTTCGGAGGAAACTTATCAAAGTTTGAGC
AAATACGCTAAGAATTTTAATGAACTTGCTGCGGAGGGCAAACTAGACCCTGTGATTGGTAGAGATGAGGAAATTCGCCG
TGTGTTGCAAATTCTTTCTAGGAGAACCAAAAACAACCCTATCCTTATAGGAGAGCCTGGGGTTGGTAAAACGGCTATTG
CTGAAGGGATTGCACACAGGATTATTTCGGGAGATGTACCAGAAAACCTAATGGATAAAACGCTTTATTCACTAGATATG
GGGGCGTTGGTTGCGGGAGCTAAATACAAAGGCGAGTTTGAAGAGCGTCTGAAATCTGTGGTTAACGAGGTAACGAAATC
AGATGGACAAATCATACTTTTTATAGATGAAATACATACTCTGGTAGGTGCTGGAGGTGGAGAAGGAGCCATGGATGCGG
CTAATATCCTAAAACCAGCTTTGGCTAGAGGAGAGCTTAGAGCCATAGGAGCAACGACGCTTAACGAGTATCAGAAATAC
TTTGAAAAAGATAAAGCATTGGAGCGTCGTTTCCAGAAAGTAATGGTGGAAGAGCCAGATACGGAGTCGGCAATTTCTAT
CTTGAGAGGGATTAAGGATAAGTACGAGTTTCATCATAAAATCAGGATTAAAGATGAAGCTATTATCGCTGCAGTGGAAA
TGTCTCAGCGTTATATATCAGACCGTTTTCTTCCAGATAAAGCTATTGATTTGATAGACGAGGCTTCTTCTAAACTAAGA
ATGGAAATCAATTCTAAGCCTGAAGAGTTGGATATTCTAGATAGAAAATTGATGCAGCTAGAGATAGAACTTGCTGCAAT
TTCTAGAGAAGGTAATCAAACTAAAATAGACCACCTTAAAGAGGATATAGCTAAGGTCACCGAGGAAAGAAACGAAATCA
ATGCAAAGTGGTTACAAGAAAAGCAAAAGTCTGAAGATTTAACTCAGATTAAAAAAGACATTGAGGCGTTGAAGTTAGAA
GCAGAAAGGGCTCAAAGATTAGGCGACTATGCTAAGGTTTCAGAAATTCAGTATGGTAAATTAAGGGAAAAGGAAGAGGA
TCTTCGTAAAATAGAACTCCTGATGCAGAATAACCAAAATGAACTTATTAAAGAAGAGGTAACGGCAGAGCATATTTCCG
AAGTTATTTCTAAATGGACGGGGATTCCTGTCACTAAACTTCTGCAAAGCGAGAGAGAAAAATTACTTCACCTAGAAGAC
GAGCTTCACAAAAGAGTAGTGGGGCAAGAGGAGGCTATAGAAGCCGTGGCTAATGCTATCAGAAGAAATCGTGCAGGGCT
TAATGATGAGAAAAAACCAATTGGTTCATTCCTGTTTTTAGGAACTACGGGAGTAGGTAAAACCGAATTGGCAAAAGCAT
TAGCAGAGTTCCTATTTGATGATGAAAATAATATGACTCGTATTGATATGAGTGAATATCAAGAGCGTCATTCGGTGTCT
AGATTAGTGGGTGCTCCTCCAGGGTATGTAGGCTATGATGAAGGCGGACAACTTACGGAAGCGGTAAGAAGAAGACCTTA
TTCGGTAGTGCTTTTAGACGAAATAGAAAAGGCTCACCCTGATGTGTTTAATACTTTATTGCAGGTGTTAGACGACGGAA
GGCTTACGGATAATAAAGGTCGTGTTGTTAATTTCAAAAACACTATCGTGATTATGACTTCTAACTTGGGTTCTCATATT
ATTCAAGAAAATTTTGAAGGGCTTACAGAAGAAAATCAGGAGGAAATAGTTTCTAAAACTAAAGAGGAAGTTTTTGGAGT
GCTTAAACAGTCGTTGCGTCCAGAGTTTATCAATAGGATAGATGAGGTGGTGCTCTTCCAACCGCTTAATAAGAAAGAAA
TAGGTAAGATTATACAATACTTGCTTAGAGGCTTTAATAAGATGTTGGAAAAGAAAAATATCATTTTAACATCTACCGAA
GATGCATTAAACTACATTAGAGAGAAAGGTTATGATCCTTCGTTTGGGGCAAGACCGCTCAAGAGATTGTTGCAACAGGA
AGTGCTTAACCAGCTTTCTAAAGAAATTCTCGCAGGTAATGTGAATGATGGCGACCGCATTATTTTAGATTATTTCAAAG
AGAGTGGATTGGTATTTAGACAAGCAGAGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
47.381 |
99.537 |
0.472 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
42.41 |
100 |
0.424 |
| clpE | Streptococcus pneumoniae TIGR4 |
45.245 |
80.417 |
0.364 |
| clpC | Streptococcus pneumoniae D39 |
45.573 |
79.838 |
0.364 |
| clpC | Streptococcus pneumoniae TIGR4 |
45.573 |
79.838 |
0.364 |
| clpC | Streptococcus pneumoniae Rx1 |
45.573 |
79.838 |
0.364 |
| clpE | Streptococcus pneumoniae Rx1 |
44.828 |
80.649 |
0.362 |
| clpE | Streptococcus pneumoniae D39 |
44.828 |
80.649 |
0.362 |
| clpE | Streptococcus pneumoniae R6 |
44.828 |
80.649 |
0.362 |
| clpE | Streptococcus mutans UA159 |
45.815 |
78.911 |
0.362 |