Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LH86_RS12245 Genome accession   NZ_CP009459
Coordinates   2609351..2609980 (+) Length   209 a.a.
NCBI ID   WP_039301647.1    Uniprot ID   -
Organism   Cedecea neteri strain ND14a     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2604351..2614980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LH86_RS12225 (LH86_12365) - 2604736..2606490 (-) 1755 WP_039306138.1 AAA family ATPase -
  LH86_RS12230 (LH86_12370) matP 2606667..2607119 (+) 453 WP_039301638.1 macrodomain Ter protein MatP -
  LH86_RS12235 (LH86_12375) ompA 2607211..2608266 (-) 1056 WP_039301640.1 porin OmpA -
  LH86_RS12240 (LH86_12380) sulA 2608624..2609133 (-) 510 WP_039301643.1 SOS-induced cell division inhibitor SulA -
  LH86_RS12245 (LH86_12385) sxy/tfoX 2609351..2609980 (+) 630 WP_039301647.1 TfoX/Sxy family DNA transformation protein Regulator
  LH86_RS12250 (LH86_12390) yccS 2609965..2612103 (-) 2139 WP_039306141.1 YccS family putative transporter -
  LH86_RS12255 (LH86_12395) - 2612116..2612562 (-) 447 WP_039301650.1 YccF domain-containing protein -
  LH86_RS12260 (LH86_12400) helD 2612693..2614747 (+) 2055 WP_039301653.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24262.27 Da        Isoelectric Point: 10.4489

>NTDB_id=129475 LH86_RS12245 WP_039301647.1 2609351..2609980(+) (sxy/tfoX) [Cedecea neteri strain ND14a]
MKKVTFFRIHKSREYLSSLGKIGYRPLFGGYSLMVEGVVFAMVAEGELYLRASEQCADYFIKKASPPLMYSKRGLPVALN
YYRVDEELWENPDKLVQLSFLALRSAQREKSQSKVRSRRLKDLPNLSLNIEVMLREVGINDPQTLRRFGAKRSWLKLRST
RKTVGIKVLLALAGAIRGVHEAVLPADVRKELTDWWRCYEQRHQPYSEH

Nucleotide


Download         Length: 630 bp        

>NTDB_id=129475 LH86_RS12245 WP_039301647.1 2609351..2609980(+) (sxy/tfoX) [Cedecea neteri strain ND14a]
ATGAAAAAAGTGACATTTTTTAGAATTCATAAATCACGGGAATATCTTTCGTCGCTGGGTAAAATCGGTTATCGACCGTT
ATTTGGTGGTTATAGTCTGATGGTCGAAGGTGTTGTCTTTGCTATGGTAGCGGAAGGGGAGCTTTACCTTCGGGCCAGTG
AACAATGTGCCGATTATTTCATCAAAAAAGCGTCTCCACCGCTTATGTACAGTAAGCGTGGGCTTCCAGTCGCACTGAAT
TACTATCGTGTTGATGAAGAACTTTGGGAAAATCCCGATAAACTTGTCCAACTCTCTTTCCTGGCGTTAAGAAGCGCTCA
ACGTGAGAAATCGCAGAGTAAAGTGCGTTCTCGCCGCCTTAAGGATCTCCCCAATCTTTCCCTGAATATCGAAGTTATGC
TGCGTGAAGTGGGTATTAATGATCCCCAAACGCTACGGCGCTTTGGTGCCAAGCGGTCGTGGTTGAAACTACGCAGTACA
AGGAAAACGGTAGGTATTAAAGTGTTGCTTGCGCTTGCGGGGGCCATACGTGGTGTTCATGAGGCTGTATTGCCTGCAGA
TGTTAGAAAAGAACTGACGGACTGGTGGCGCTGCTATGAGCAGCGCCACCAGCCTTACTCGGAGCACTGA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-105)

TfoX C-terminal domain (TfoX_C)

(117-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

54.359

93.301

0.507

Multiple sequence alignment