Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LH86_RS08510 Genome accession   NZ_CP009459
Coordinates   1784896..1786278 (+) Length   460 a.a.
NCBI ID   WP_008460107.1    Uniprot ID   A0A9W5J693
Organism   Cedecea neteri strain ND14a     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1779896..1791278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LH86_RS08490 (LH86_08580) yjjJ 1780648..1781976 (+) 1329 WP_039300252.1 type II toxin-antitoxin system HipA family toxin YjjJ -
  LH86_RS08495 (LH86_08585) lplA 1781973..1782989 (-) 1017 WP_039300254.1 lipoate--protein ligase LplA -
  LH86_RS08500 (LH86_08590) - 1783064..1783699 (-) 636 WP_039300256.1 YtjB family periplasmic protein -
  LH86_RS08505 (LH86_08595) serB 1783904..1784881 (+) 978 WP_039300259.1 phosphoserine phosphatase -
  LH86_RS08510 (LH86_08600) radA 1784896..1786278 (+) 1383 WP_008460107.1 DNA repair protein RadA Machinery gene
  LH86_RS08515 (LH86_08605) nadR 1786325..1787557 (+) 1233 WP_008460108.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  LH86_RS08520 (LH86_08610) ettA 1787671..1789338 (-) 1668 WP_008460109.1 energy-dependent translational throttle protein EttA -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49583.22 Da        Isoelectric Point: 7.1552

>NTDB_id=129472 LH86_RS08510 WP_008460107.1 1784896..1786278(+) (radA) [Cedecea neteri strain ND14a]
MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRIAASPQVARNERLSGYAGSAGVSRVQKLSDISLEELPRFSTG
FKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLSEQMKTLYVTGEESLQQVAMRAHRLGLPTQNLNMLSETSIE
QICMIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTKGVAIVMVGHVTKDGSLAGPKVLEHCIDCS
VMLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTPGSSVMVVWEGTRPLLVEIQALVDQ
SMMSNPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRALPQDLVVFGEV
GLAGEIRPVPSGQERISEAAKHGFKRAIVPQANVPKKIPEGMQVFGVKKLADALSVFDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=129472 LH86_RS08510 WP_008460107.1 1784896..1786278(+) (radA) [Cedecea neteri strain ND14a]
GTGGCGAAAGCTCCAAAACGCGCATTTGTTTGTAACGAGTGTGGTGCGGATTACCCGCGCTGGCAGGGGCAGTGCAGCGC
CTGTCACGCGTGGAATACCATTACCGAAGTGCGCATCGCCGCTTCTCCACAGGTTGCCCGCAACGAGCGCCTCTCCGGCT
ATGCCGGGAGCGCGGGCGTCAGCCGCGTACAAAAGCTTTCGGACATCAGCCTGGAAGAATTGCCGCGCTTTTCCACTGGT
TTTAAAGAGTTTGACCGTGTGCTGGGCGGCGGCGTAGTGCCGGGCAGCGCCATTCTGATCGGCGGTAACCCAGGCGCAGG
GAAATCAACGTTGCTGCTGCAAACGCTTTGCAAGCTGAGCGAGCAGATGAAAACCCTGTACGTCACCGGCGAAGAGTCGC
TTCAGCAGGTGGCGATGCGCGCCCACCGTTTAGGTCTGCCGACGCAAAACCTCAATATGCTGTCGGAAACCAGCATCGAA
CAGATCTGTATGATCGCCGAGGAAGAACAGCCGAAGCTGATGGTGATTGACTCGATCCAGGTCATGCACATGGCGGATGT
GCAATCTTCGCCGGGCAGCGTGGCCCAGGTGCGTGAAACTGCAGCCTACCTGACGCGTTTTGCTAAGACGAAAGGTGTGG
CGATCGTGATGGTCGGGCACGTCACGAAAGATGGTTCTCTGGCGGGGCCAAAAGTTCTCGAACACTGTATCGACTGTTCA
GTGATGCTCGACGGCGATGCCGATTCCCGCTTCCGTACTCTGCGCAGCCATAAAAACCGCTTTGGGGCAGTGAACGAGCT
GGGCGTGTTTGCGATGACCGAGCAGGGACTGCGCGAAGTCAGCAACCCGTCGGCCATTTTCCTCAGCCGGGGAGATGAAG
TGACGCCGGGCAGTTCGGTGATGGTGGTTTGGGAAGGGACGCGTCCTCTGCTGGTTGAGATCCAGGCGCTGGTGGATCAG
TCGATGATGTCCAACCCCCGCCGCGTAGCCGTTGGTCTGGAGCAAAACCGCCTGGCGATTCTGCTGGCCGTGCTCCACCG
TCACGGTGGCCTGCAAATGGCCGATCAGGACGTGTTTGTGAACGTGGTGGGCGGCGTAAAGGTTACCGAAACCAGCGCCG
ACCTGGCGCTACTGCTGGCGATGGTTTCAAGCCTGCGCGACAGAGCCTTGCCGCAGGATTTGGTGGTATTTGGTGAAGTC
GGGCTGGCGGGTGAAATCCGCCCGGTACCTAGCGGGCAGGAGCGTATTTCCGAAGCCGCCAAACACGGCTTTAAGCGCGC
GATTGTGCCTCAGGCCAACGTACCGAAAAAAATTCCTGAAGGGATGCAGGTCTTCGGCGTGAAAAAACTTGCTGATGCGC
TTTCTGTATTCGACGACTTATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(348-433)

AAA domain (AAA_25)

(89-225)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.043

100

0.48
  radA Streptococcus pneumoniae Rx1

43.64

99.13

0.433
  radA Streptococcus pneumoniae D39

43.64

99.13

0.433
  radA Streptococcus pneumoniae R6

43.64

99.13

0.433
  radA Streptococcus pneumoniae TIGR4

43.64

99.13

0.433
  radA Streptococcus mitis NCTC 12261

43.64

99.13

0.433
  radA Streptococcus mitis SK321

43.64

99.13

0.433

Multiple sequence alignment