Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   ACG06_RS24450 Genome accession   NZ_CP011857
Coordinates   5259992..5261434 (-) Length   480 a.a.
NCBI ID   WP_016852097.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain ATCC 27853     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5254992..5266434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG06_RS24420 (ACG06_24445) - 5255318..5256433 (+) 1116 WP_003101181.1 glycosyltransferase family 1 protein -
  ACG06_RS24425 (ACG06_24450) - 5256426..5257187 (+) 762 WP_003101179.1 DUF2334 domain-containing protein -
  ACG06_RS24430 (ACG06_24455) - 5257184..5258185 (+) 1002 WP_016852096.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  ACG06_RS24435 (ACG06_24460) - 5258160..5258372 (-) 213 WP_003101176.1 hypothetical protein -
  ACG06_RS24440 (ACG06_24465) purU 5258422..5259273 (-) 852 WP_003101174.1 formyltetrahydrofolate deformylase -
  ACG06_RS24445 (ACG06_24470) mvaT 5259533..5259907 (+) 375 WP_003093888.1 histone-like nucleoid-structuring protein MvaT -
  ACG06_RS24450 (ACG06_24475) sbcB 5259992..5261434 (-) 1443 WP_016852097.1 exodeoxyribonuclease I Machinery gene
  ACG06_RS24455 (ACG06_24480) - 5261659..5262396 (+) 738 WP_003101171.1 hypothetical protein -
  ACG06_RS24460 (ACG06_24485) - 5262434..5263231 (+) 798 WP_004348090.1 RDD family protein -
  ACG06_RS24465 (ACG06_24490) - 5263228..5264208 (+) 981 WP_003112783.1 stage II sporulation protein M -
  ACG06_RS24470 (ACG06_24495) - 5264195..5265766 (+) 1572 WP_003120854.1 DUF4129 domain-containing protein -

Sequence

Protein


Download         Length: 480 a.a.        Molecular weight: 55463.73 Da        Isoelectric Point: 5.5542

>NTDB_id=129447 ACG06_RS24450 WP_016852097.1 5259992..5261434(-) (sbcB) [Pseudomonas aeruginosa strain ATCC 27853]
MTVNASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGITPQRLAERGLSEADF
MTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAREWQGGNSRWDLIDMVRTAYALRPEGIQWPQLDGRLSLK
LEMLTAANGLEHGQAHDALSDVRATIALARLIRQRQPRLYDYLYQLRSKHKVLDQVRLLQPLVHVSGRFSAERHFLSVVL
PLAWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNRCPVVAPLSVLRAEDRQRTGIE
LEECQRKAELLRQHQTVWADKLTALYGEESFSASDDPEQQLYDGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQEL
FFRYRARNFPETLNAAERQQWESFCRNRLSHEEYGAPNTLPAFEAALEACRQEQGGTLPAVLAAWRDYAAELRQRYSLET

Nucleotide


Download         Length: 1443 bp        

>NTDB_id=129447 ACG06_RS24450 WP_016852097.1 5259992..5261434(-) (sbcB) [Pseudomonas aeruginosa strain ATCC 27853]
ATGACCGTGAACGCGAGTATTTTTTGGTACGACTACGAAACCACCGGCATCGACCCTCGCCGCGACCGGCCGTTGCAGAT
CGCCGGGATCCGCACGGACGAGGCGCTGAACGAGATCGGCGAGCCGATGAACCTGTATTGCCGTCCCAGCGACGATATCC
TGCCCCACCCTATGGCTTGCCTGATCACCGGCATCACTCCCCAGCGGCTGGCCGAGCGGGGGCTGTCCGAGGCCGACTTC
ATGACCCGGGTACACGCCCAACTGGCGCAGCCGGCGACCTGCGTGGCCGGCTACAACTCCCTGCGCTTCGACGACGAAGT
GACGCGCTACAGCCTGTACCGCAACTTCTTCGATCCCTACGCCCGCGAGTGGCAAGGCGGCAATAGCCGCTGGGACCTGA
TCGACATGGTCCGTACCGCCTATGCCCTGCGCCCGGAGGGCATCCAGTGGCCGCAGCTGGACGGCCGGCTGTCGCTGAAG
CTGGAAATGCTCACCGCGGCGAACGGCCTGGAGCATGGGCAGGCCCACGACGCGCTTTCCGATGTCCGCGCCACCATTGC
CCTGGCCCGCCTGATCCGTCAGCGCCAGCCGCGCCTGTACGATTACCTCTACCAGTTGCGCAGCAAGCACAAGGTGCTCG
ACCAGGTGCGCCTGCTGCAGCCGCTGGTGCATGTCTCCGGACGCTTTTCCGCGGAGCGCCATTTCCTCTCGGTGGTCCTG
CCGCTGGCCTGGCACCCGCGCAACCGCAATGCTCTGATCGTCTGCGACCTCTGCGCCGATCCCGCGCCGCTGCTGGAGTT
GTCGGCCGAGGACTTGCGCAGGCGCCTGTATACCCGTCGCGACGAACTGGCCGAGGGCGAGTTGCCGGTGCCGCTGAAGC
AGATCCAGGTCAACCGTTGCCCGGTGGTGGCGCCGCTGTCGGTATTGCGCGCCGAGGATCGCCAGCGAACCGGCATCGAA
CTCGAGGAGTGCCAGCGAAAAGCCGAGCTGTTGCGCCAGCATCAAACCGTCTGGGCGGACAAACTGACAGCGCTATATGG
CGAAGAAAGTTTCTCCGCCAGCGACGACCCCGAGCAACAGTTGTATGACGGATTTATTGGCGATCGGGATCGACGCCTTT
GTGAACAGCTGCGCCTTGCCGAACCGGAGCAATTGGCCAAAGAACAATGGCCCTTCGACGATGCCCGTTTGCAGGAGTTG
TTCTTCCGCTATCGTGCGCGAAATTTCCCGGAAACTTTAAATGCAGCCGAGCGCCAACAATGGGAAAGCTTCTGCCGCAA
TCGTTTGTCCCATGAAGAATACGGCGCACCGAATACTTTGCCGGCCTTCGAGGCGGCGCTGGAGGCTTGTCGGCAAGAGC
AGGGCGGCACATTGCCGGCGGTACTTGCGGCCTGGCGCGATTACGCCGCGGAACTGCGTCAACGCTATTCGCTGGAGACT
TGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(207-470)

Exonuclease (RNase_T)

(9-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

49.647

88.542

0.44