Detailed information NTG0129444

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: ACG06_RS23660
• Genome accession: NZ_CP011857
• Coordinates: 5079659..5082508 (+)
• Length: 949 a.a.
• NCBI ID: WP_016852013.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain ATCC 27853
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 5074659..5087508

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACG06_RS23635 (ACG06_23660)	-	5074843..5075061 (-)	219	WP_016852009.1	AlpA family transcriptional regulator	-
ACG06_RS23640 (ACG06_23665)	-	5075203..5075961 (-)	759	WP_003454930.1	hypothetical protein	-
ACG06_RS23645 (ACG06_23670)	-	5076501..5077409 (-)	909	WP_012761385.1	LysR family transcriptional regulator	-
ACG06_RS33595	-	5077549..5077978 (+)	430	Protein_4736	IS66 family transposase zinc-finger binding domain-containing protein	-
ACG06_RS23650 (ACG06_23675)	-	5078016..5078393 (-)	378	WP_016446188.1	IS110 family transposase	-
ACG06_RS32705	-	5078678..5078950 (+)	273	Protein_4738	helix-turn-helix domain-containing protein	-
ACG06_RS23655 (ACG06_23680)	-	5078995..5079564 (+)	570	WP_016852012.1	Hsp20/alpha crystallin family protein	-
ACG06_RS23660 (ACG06_23685)	clpC	5079659..5082508 (+)	2850	WP_016852013.1	heat shock survival AAA family ATPase ClpK	Regulator
ACG06_RS23665 (ACG06_23690)	cls	5082525..5083955 (+)	1431	WP_023084997.1	cardiolipin synthase	-
ACG06_RS23670 (ACG06_23695)	ftsH	5083983..5085812 (+)	1830	WP_016852015.1	ATP-dependent zinc metalloprotease FtsH	-
ACG06_RS23675 (ACG06_23700)	hsp20-GI	5085891..5086349 (+)	459	WP_016852016.1	small heat shock protein sHSP20-GI	-
ACG06_RS23680 (ACG06_23705)	yfdX1	5086372..5087286 (+)	915	WP_001022485.1	heat resistance protein YfdX1	-

Sequence

Protein

• Length: 949 a.a.
• Molecular weight: 104310.14 Da
• Isoelectric Point: 5.8094

>NTDB_id=129444 ACG06_RS23660 WP_016852013.1 5079659..5082508(+) (clpC) [Pseudomonas aeruginosa strain ATCC 27853]
MARKQCQVCGQSATVRVEANLNGRHSTMLLCDDHYRQLARQQKRTVSPLEALFGSRSGLFEDFLGSDFFRIGDDAPSVAA
DADEVVDASFGESAPATAGTARRRGSGLASRISEQSEALLQEAARHAAEFGRAEVDTEHLLLALSDSDVVKTILGQFKIK
VDDLKRQIESEAKRGDKPFEGEIGVSPRVKDALSRAFVASNELGHSYVGPEHFLIGLAEEGEGLAANLLRRYGLTPQALR
QQVSKVVGKGAEDGRAETPTNTPELDKYSRDLTKMAREGKLDPVIGRAQEIETTIEVLARRKKNNPVLIGEPGVGKTAIV
EGLAQRMVAGEVPETLRDKRLVELNINAMVAGAKYRGEFEERVQKVLKEVTEHQGELILFIDEVHTIVGAGQGGGEGGLD
VANVFKPMMARGELNLIGATTLNEYQKYIEKDAALERRFQPVMVPEPTVAQTMMILRGLRDTFEAHHKVSITEDAIIAAA
ELSDRYITARFLPDKAIDLLDQAAARVKLSATARPVAVQELESELHQLRREQDYVASRKQYDKAAELGKRIEAKETELKK
LVEEWERERASGSAEVKAEHVAQIVSRLTGIPVNELTVEEREKLLHLEQRLHERLVGQDEAVRAVADAVRLSRAGLREGG
KPVATFLFLGPTGVGKTELAKALAESIYGDEGALLRIDMSEYGERHTVARLVGAPPGYVGYDEGGQLTEKVRRKPYSVLL
LDEIEKAHPDVYNILLQVFDDGRLTDGKGRVVDFTNTIIIATSNLGSDIIQRRLKARGAAGEEYEKTKSEVMDVLRGHFR
PEFLNRIDEIIVFHALGKEEIRHIVGLQLDRVARNAASQGVTLTFDQTLIDHFAEEGYKPEFGARELKRLIRSELETALA
REMLGGGIGKADHASARWDDKAERVVFERQEPAAQPAEPEKPDAANVAEAPPNGESKPARKKKSAGGGS

Nucleotide

• Length: 2850 bp

>NTDB_id=129444 ACG06_RS23660 WP_016852013.1 5079659..5082508(+) (clpC) [Pseudomonas aeruginosa strain ATCC 27853]
ATGGCCAGAAAACAATGCCAAGTCTGCGGCCAGTCCGCCACGGTGCGGGTGGAAGCCAATCTCAATGGTCGCCACAGCAC
CATGCTGTTGTGTGACGATCACTATCGCCAACTGGCGCGCCAGCAAAAGCGCACCGTCTCGCCGCTGGAGGCTCTGTTTG
GCTCGCGCAGCGGTTTGTTCGAAGACTTCCTCGGCAGCGACTTCTTCCGCATCGGTGACGATGCACCGTCCGTGGCGGCT
GATGCCGACGAAGTGGTCGATGCGTCTTTCGGCGAATCCGCTCCCGCAACGGCGGGCACGGCGCGCCGCCGCGGCAGTGG
GCTGGCCAGCCGTATCAGCGAACAGTCCGAGGCCCTATTGCAGGAGGCCGCCCGACACGCTGCAGAGTTCGGGCGCGCCG
AAGTCGATACCGAACACCTGCTGCTGGCGCTATCCGACAGCGACGTGGTCAAGACCATCCTGGGGCAGTTCAAGATCAAG
GTCGATGACCTCAAGCGCCAGATCGAATCCGAAGCCAAGCGCGGCGATAAGCCGTTCGAGGGCGAGATCGGCGTGTCGCC
CCGGGTCAAGGACGCGCTCAGCCGTGCTTTCGTGGCCTCCAACGAACTCGGCCACTCTTATGTCGGGCCGGAGCATTTCC
TGATCGGGCTCGCCGAGGAAGGCGAAGGTTTGGCGGCCAACCTGCTGCGCCGTTACGGCCTCACGCCGCAAGCGCTGCGC
CAGCAGGTAAGCAAGGTGGTCGGCAAAGGGGCCGAGGATGGCCGCGCCGAGACGCCGACCAACACGCCGGAACTCGACAA
GTATTCGCGCGACCTCACCAAGATGGCGCGCGAGGGCAAGCTCGATCCGGTCATCGGCCGCGCGCAGGAGATCGAGACGA
CCATCGAAGTGCTGGCCCGGCGCAAGAAGAACAACCCGGTGCTGATCGGCGAGCCCGGCGTCGGCAAGACCGCCATCGTC
GAAGGGCTGGCGCAGCGCATGGTCGCCGGCGAAGTGCCCGAGACGCTGCGCGACAAGCGCCTGGTGGAACTCAACATCAA
TGCCATGGTGGCCGGCGCCAAGTACCGCGGCGAGTTCGAGGAGCGCGTGCAGAAGGTGCTCAAGGAAGTGACCGAGCACC
AGGGCGAGCTGATTCTCTTCATCGACGAAGTGCACACCATCGTCGGTGCAGGCCAGGGTGGCGGCGAAGGCGGGCTGGAC
GTGGCCAACGTGTTCAAGCCGATGATGGCGCGCGGCGAACTGAACCTGATCGGCGCCACCACGCTCAACGAGTATCAGAA
GTACATCGAGAAGGACGCCGCGCTGGAGCGTCGCTTCCAGCCGGTGATGGTGCCCGAGCCGACGGTAGCGCAGACCATGA
TGATCCTGCGCGGCCTGCGCGACACCTTCGAGGCGCACCACAAGGTCAGCATCACCGAGGATGCGATCATCGCCGCCGCC
GAGTTGTCGGACCGCTACATCACCGCGCGCTTTTTGCCTGACAAGGCCATCGACCTGCTCGACCAGGCGGCCGCACGCGT
GAAGCTGTCGGCCACGGCCCGCCCGGTGGCGGTGCAAGAGCTGGAGTCCGAACTGCACCAGCTGCGGCGTGAGCAAGACT
ATGTGGCTTCGCGCAAGCAGTACGACAAGGCCGCCGAGCTGGGCAAGCGCATCGAGGCCAAGGAGACTGAACTCAAGAAG
CTCGTCGAGGAATGGGAACGCGAGCGCGCCTCGGGCAGCGCCGAAGTCAAGGCCGAGCATGTCGCGCAGATCGTCTCGCG
CCTGACCGGCATTCCGGTCAACGAGCTGACGGTGGAAGAACGCGAGAAGCTGCTGCATCTGGAGCAGCGGCTGCACGAGC
GCCTGGTGGGCCAGGACGAAGCAGTACGTGCCGTGGCCGATGCCGTGCGGCTGTCGCGCGCGGGCCTGCGCGAAGGCGGC
AAGCCAGTGGCCACCTTCCTGTTCCTCGGGCCGACGGGTGTGGGCAAGACCGAACTCGCCAAGGCACTGGCCGAGTCCAT
CTATGGCGATGAGGGCGCGCTGCTGCGCATCGACATGTCCGAGTACGGTGAACGCCATACCGTGGCACGCCTGGTGGGCG
CGCCTCCGGGTTATGTGGGCTATGACGAGGGCGGCCAGCTCACCGAGAAGGTGCGTCGCAAACCCTACAGCGTGTTGTTG
CTCGATGAGATCGAAAAAGCGCACCCCGACGTCTACAACATCCTGCTGCAGGTATTCGACGACGGGCGGCTCACCGACGG
CAAGGGCCGGGTGGTGGATTTCACCAATACCATCATCATCGCCACCTCGAACTTGGGCTCGGACATCATCCAGCGTCGGC
TGAAGGCCCGTGGCGCCGCCGGCGAGGAATACGAGAAGACCAAGTCCGAGGTGATGGACGTGCTGCGCGGACACTTCCGC
CCCGAGTTCCTCAACCGCATCGACGAGATCATCGTCTTCCATGCGCTGGGCAAGGAGGAGATCCGCCATATCGTCGGCCT
GCAGCTCGATCGTGTGGCCCGCAACGCCGCCAGCCAGGGCGTGACGTTGACCTTCGACCAGACCTTGATCGACCACTTCG
CGGAGGAAGGCTACAAACCCGAGTTCGGCGCGCGCGAGCTCAAGCGGCTGATCCGCAGCGAGCTGGAAACCGCGCTGGCA
CGCGAGATGCTCGGTGGTGGCATCGGCAAGGCCGATCACGCCAGCGCCCGCTGGGATGACAAGGCCGAACGGGTGGTCTT
CGAGCGCCAGGAGCCAGCCGCGCAGCCGGCCGAGCCTGAAAAGCCCGATGCAGCGAACGTGGCCGAGGCACCGCCGAACG
GCGAGAGCAAGCCTGCGCGCAAGAAGAAGTCAGCGGGCGGCGGATCTTGA

Domains

Predicted by InterProScan.

• Clp amino terminal domain, pathogenicity island component (Clp_N) (123-171)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (199-248)

• ATPase family associated with various cellular activities (AAA) (AAA) (307-440)

• AAA domain (Cdc48 subfamily) (AAA_2) (641-810)

• AAA lid domain (AAA_lid_9) (449-547)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (816-894)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	50.818	83.772	0.426
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	43.59	86.301	0.376
clpC	Streptococcus thermophilus LMD-9	41.99	86.828	0.365
clpC	Streptococcus thermophilus LMG 18311	41.9	86.512	0.362
clpC	Streptococcus mutans UA159	42.086	85.88	0.361
clpC	Streptococcus pneumoniae Rx1	42.118	85.564	0.36
clpC	Streptococcus pneumoniae D39	42.118	85.564	0.36