Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ACG06_RS23395 Genome accession   NZ_CP011857
Coordinates   5023204..5023698 (-) Length   164 a.a.
NCBI ID   WP_011237261.1    Uniprot ID   A0A5E5A3I0
Organism   Pseudomonas aeruginosa strain ATCC 27853     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5018204..5028698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG06_RS23370 (ACG06_23395) - 5018339..5019862 (-) 1524 WP_011829990.1 conjugal transfer protein TraG N-terminal domain-containing protein -
  ACG06_RS23375 (ACG06_23400) - 5019878..5020231 (-) 354 WP_003292115.1 hypothetical protein -
  ACG06_RS23380 (ACG06_23405) - 5020228..5021634 (-) 1407 WP_011829988.1 integrating conjugative element protein -
  ACG06_RS23385 (ACG06_23410) - 5021645..5022589 (-) 945 WP_016851975.1 TIGR03756 family integrating conjugative element protein -
  ACG06_RS23390 (ACG06_23415) - 5022586..5023035 (-) 450 WP_013982143.1 TIGR03757 family integrating conjugative element protein -
  ACG06_RS23395 (ACG06_23420) radC 5023204..5023698 (-) 495 WP_011237261.1 DNA repair protein RadC Machinery gene
  ACG06_RS23400 (ACG06_23425) - 5023894..5024637 (-) 744 WP_016851976.1 DsbA family protein -
  ACG06_RS23405 (ACG06_23430) - 5024651..5027539 (-) 2889 WP_016851977.1 conjugative transfer ATPase -
  ACG06_RS23410 (ACG06_23435) - 5027539..5027973 (-) 435 WP_013721892.1 TIGR03751 family conjugal transfer lipoprotein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17848.54 Da        Isoelectric Point: 6.6460

>NTDB_id=129443 ACG06_RS23395 WP_011237261.1 5023204..5023698(-) (radC) [Pseudomonas aeruginosa strain ATCC 27853]
MSLVIADSRPESLTLLAAQHEDWIIRQAITLLENRVFKAGPALGSPAAVRDYLRLKLVAEPNEIFAVVFLDNQHQVLAFE
PLFKGTVDQTSVYPRVVVQRALALNASALILAHQHPSGNTEPSAADRAITERLKSALATVDVRVLDHFIVGKGSPYSFAE
AGLL

Nucleotide


Download         Length: 495 bp        

>NTDB_id=129443 ACG06_RS23395 WP_011237261.1 5023204..5023698(-) (radC) [Pseudomonas aeruginosa strain ATCC 27853]
ATGTCTCTCGTCATCGCCGACTCCCGCCCGGAGTCGCTCACCCTGCTCGCCGCCCAGCACGAAGACTGGATCATCCGGCA
GGCCATCACCCTGCTGGAGAACCGCGTGTTCAAGGCCGGTCCGGCGCTGGGCAGTCCCGCCGCCGTGCGCGACTACCTGC
GCTTGAAACTGGTCGCGGAGCCGAACGAAATCTTCGCCGTCGTGTTTCTCGACAACCAGCACCAGGTACTCGCCTTCGAG
CCGCTGTTCAAGGGCACGGTCGACCAGACTTCGGTGTATCCGAGGGTGGTGGTCCAGCGTGCGCTGGCGCTCAACGCTTC
GGCGCTGATCCTGGCGCATCAGCACCCCTCGGGGAACACCGAGCCCTCGGCCGCTGATCGTGCGATCACCGAGCGGCTGA
AGAGTGCCCTGGCCACCGTCGATGTCCGGGTGCTGGATCACTTCATCGTCGGCAAGGGCAGCCCGTACTCGTTCGCCGAA
GCCGGCTTGCTGTAG

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(44-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5E5A3I0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

47.26

89.024

0.421