Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LH22_RS18745 Genome accession   NZ_CP009454
Coordinates   4092981..4094363 (-) Length   460 a.a.
NCBI ID   WP_038649226.1    Uniprot ID   -
Organism   Pantoea rwandensis strain ND04     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4087981..4099363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LH22_RS18730 (LH22_19265) - 4088736..4089683 (-) 948 WP_038649217.1 2-hydroxyacid dehydrogenase -
  LH22_RS18735 (LH22_19270) ettA 4089858..4091525 (+) 1668 WP_071845633.1 energy-dependent translational throttle protein EttA -
  LH22_RS18740 (LH22_19275) nadR 4091578..4092804 (-) 1227 WP_038649223.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  LH22_RS18745 (LH22_19280) radA 4092981..4094363 (-) 1383 WP_038649226.1 DNA repair protein RadA Machinery gene
  LH22_RS18750 (LH22_19285) serB 4094377..4095354 (-) 978 WP_038649229.1 phosphoserine phosphatase -
  LH22_RS18755 (LH22_19290) - 4095462..4096139 (+) 678 WP_038649232.1 YtjB family periplasmic protein -
  LH22_RS18760 (LH22_19295) yjjJ 4096136..4097458 (-) 1323 WP_038649235.1 type II toxin-antitoxin system HipA family toxin YjjJ -
  LH22_RS18765 (LH22_19300) yjjG 4097587..4098270 (-) 684 WP_038649238.1 pyrimidine 5'-nucleotidase -
  LH22_RS18770 (LH22_19305) rimI 4098282..4098722 (-) 441 WP_038649241.1 ribosomal protein S18-alanine N-acetyltransferase -
  LH22_RS18775 (LH22_19310) - 4098694..4099104 (-) 411 WP_038649244.1 DNA polymerase III subunit psi -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49271.90 Da        Isoelectric Point: 7.6497

>NTDB_id=129395 LH22_RS18745 WP_038649226.1 4092981..4094363(-) (radA) [Pantoea rwandensis strain ND04]
MAKAAKRAFVCNECGADYPRWQGQCSACNAWNTITEVRIAASPAAARNERLSGYAGSAGPSRVQKLSEISLEAVPRFSTS
FKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQVMCKLSEGMKTLYVTGEESLQQVAMRAHRLGLPTENLNMLSETSIE
QICLIAEQEQPKLMVIDSIQVMHMADIQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS
VMLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGMREISNPSAIFLSRGDEVTSGSSVMVVWEGSRPLLVEIQALVDH
SMMGNPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVIFGEV
GLAGEIRPVPSGQERISEAAKHGFKRAIVPAGNAPKKAIDGMKVYSAKKLADALAILDEL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=129395 LH22_RS18745 WP_038649226.1 4092981..4094363(-) (radA) [Pantoea rwandensis strain ND04]
TTGGCCAAAGCGGCAAAACGCGCCTTCGTTTGTAACGAGTGCGGCGCAGATTATCCACGCTGGCAGGGGCAATGTAGCGC
CTGCAACGCGTGGAACACCATCACCGAGGTGCGTATTGCCGCCTCGCCTGCGGCAGCGCGTAACGAGCGTCTGAGTGGCT
ATGCCGGTAGCGCGGGACCCAGCCGGGTGCAGAAGCTGTCCGAAATCAGCCTCGAAGCCGTGCCGCGTTTCTCCACCAGC
TTCAAAGAGTTTGATCGCGTGCTGGGCGGCGGCGTGGTGCCAGGCAGCGCGATACTGATCGGTGGTAATCCGGGAGCCGG
TAAATCGACGCTGCTGTTGCAGGTGATGTGCAAGCTGTCCGAAGGGATGAAAACCCTGTATGTCACCGGTGAAGAGTCAC
TGCAACAGGTCGCAATGCGCGCCCATCGTCTGGGATTACCCACTGAAAACCTGAATATGTTGTCGGAAACCAGTATCGAG
CAGATCTGTCTGATCGCCGAGCAGGAACAGCCGAAACTGATGGTAATCGACTCCATCCAGGTGATGCACATGGCGGATAT
CCAGTCTTCGCCTGGGAGCGTAGCGCAGGTGCGTGAAACGGCCGCTTACCTGACGCGCTTCGCTAAAACACGCGGCGTAG
CGATTGTGATGGTCGGCCACGTCACCAAAGATGGCTCGCTGGCCGGGCCAAAAGTGCTGGAACACTGCATCGACTGTTCA
GTGATGCTGGATGGCGATGCCGATTCCCGTTTCCGCACGCTGCGCAGTCACAAAAACCGCTTCGGTGCGGTGAACGAATT
GGGCGTGTTTGCCATGACCGAGCAGGGCATGCGTGAAATCAGCAACCCGTCAGCCATTTTCCTGTCACGCGGCGATGAAG
TCACCTCTGGCAGTTCGGTCATGGTGGTGTGGGAAGGTTCGCGCCCGCTGCTGGTGGAGATTCAGGCGCTGGTGGATCAC
TCAATGATGGGCAACCCGCGTCGTGTCGCAGTTGGCCTGGAGCAAAACCGTCTGGCGATTTTGCTGGCTGTTCTGCACCG
GCACGGTGGTTTACAAATGGCGGATCAGGATGTGTTCGTCAATGTGGTCGGTGGTGTGAAAGTCACCGAAACCAGTGCTG
ACCTCGCGCTGCTGCTGGCGATGGTATCGAGCTTGCGTGACCGCCCACTGCCGCAGGATTTGGTGATCTTCGGTGAAGTA
GGGCTGGCCGGTGAAATTCGTCCGGTGCCCAGCGGTCAAGAGCGCATTTCCGAAGCCGCCAAGCACGGTTTCAAGCGCGC
GATTGTGCCGGCGGGCAATGCACCGAAAAAGGCCATCGACGGCATGAAAGTGTACAGCGCCAAGAAGCTGGCGGATGCAC
TGGCGATATTGGACGAGCTGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(347-433)

AAA domain (AAA_25)

(85-225)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

47.845

100

0.483
  radA Streptococcus mitis NCTC 12261

43.956

98.913

0.435
  radA Streptococcus pneumoniae Rx1

45.244

93.696

0.424
  radA Streptococcus pneumoniae D39

45.244

93.696

0.424
  radA Streptococcus pneumoniae R6

45.244

93.696

0.424
  radA Streptococcus pneumoniae TIGR4

45.244

93.696

0.424
  radA Streptococcus mitis SK321

45.244

93.696

0.424

Multiple sequence alignment