Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   JT31_RS14455 Genome accession   NZ_CP009451
Coordinates   3117451..3118884 (-) Length   477 a.a.
NCBI ID   WP_038478430.1    Uniprot ID   A0A089RH74
Organism   Cedecea neteri strain SSMD04     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3112451..3123884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JT31_RS14425 (JT31_14700) - 3112958..3114226 (+) 1269 WP_038478416.1 GntP family permease -
  JT31_RS14430 (JT31_14705) - 3114237..3115373 (+) 1137 WP_038478419.1 glycerate kinase -
  JT31_RS14435 (JT31_14710) npr 3115391..3115663 (-) 273 WP_038478422.1 PTS phosphocarrier protein NPr -
  JT31_RS14440 (JT31_14715) rapZ 3115660..3116514 (-) 855 WP_008454836.1 RNase adapter RapZ -
  JT31_RS14445 (JT31_14720) ptsN 3116561..3117058 (-) 498 WP_038478425.1 PTS IIA-like nitrogen regulatory protein PtsN -
  JT31_RS14450 (JT31_14725) hpf 3117141..3117428 (-) 288 WP_038478427.1 ribosome hibernation promoting factor -
  JT31_RS14455 (JT31_14730) rpoN/rpoN1 3117451..3118884 (-) 1434 WP_038478430.1 RNA polymerase factor sigma-54 Machinery gene
  JT31_RS14460 (JT31_14735) lptB 3118933..3119658 (-) 726 WP_038478433.1 LPS export ABC transporter ATP-binding protein -
  JT31_RS14465 (JT31_14740) lptA 3119665..3120216 (-) 552 WP_038478436.1 lipopolysaccharide ABC transporter substrate-binding protein LptA -
  JT31_RS14470 (JT31_14745) lptC 3120185..3120757 (-) 573 WP_038478439.1 LPS export ABC transporter periplasmic protein LptC -
  JT31_RS14475 (JT31_14750) kdsC 3120754..3121320 (-) 567 WP_038478442.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  JT31_RS14480 (JT31_14755) kdsD 3121337..3122323 (-) 987 WP_038478445.1 arabinose-5-phosphate isomerase KdsD -
  JT31_RS14485 (JT31_14760) - 3122340..3123317 (-) 978 WP_038478448.1 calcium/sodium antiporter -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 53876.90 Da        Isoelectric Point: 4.4561

>NTDB_id=129354 JT31_RS14455 WP_038478430.1 3117451..3118884(-) (rpoN/rpoN1) [Cedecea neteri strain SSMD04]
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALDSNPLLEQTDLHDEIETQEMPENEAMDTREALEQKEMPD
ELPLDASWDEIYTAGTPSGTGTDYLDDELPVYQGETTQSLQDYLMWQVDLTPFSDTDTAIATSIVDAVDETGYLTVPLED
ILESLGHDDVSLDEVEAVLKRIQRFDPVGVAARDLRDCLLIQLSQYAKDTPWLAEARLIVSDHLDLLANHDFRNLMRITR
IKEDALKEAMCLIQSLDPRPGQSIQTGEPEYVIPDVLVRKHLARWVVELNADSIPRLKINQQYAAMGGNTRNDSDSQFIR
SNLQEAKWLIKSLESRNDTLLRVSRCIVEQQQAFFEHGEEHMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELK
YFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTTLLSDQGIMVARRTVAKYRESLSIPPSNQRKQLV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=129354 JT31_RS14455 WP_038478430.1 3117451..3118884(-) (rpoN/rpoN1) [Cedecea neteri strain SSMD04]
ATGAAGCAAGGTTTGCAATTACGGCTTAGCCAACAACTTGCTATGACGCCCCAGCTACAGCAGGCCATCCGCCTGTTGCA
GCTTTCAACGTTAGAGCTTCAGCAAGAACTCCAGCAGGCACTGGACAGTAATCCATTGCTTGAGCAAACCGACCTGCATG
ATGAGATCGAGACTCAGGAGATGCCTGAGAACGAAGCAATGGACACCCGTGAAGCCCTCGAGCAGAAAGAGATGCCCGAT
GAGCTGCCGCTGGATGCCAGCTGGGATGAAATCTACACCGCCGGTACGCCTTCAGGGACAGGTACCGACTATCTCGATGA
CGAGCTTCCTGTCTATCAGGGTGAAACCACCCAGTCACTTCAGGATTACCTGATGTGGCAGGTTGATCTGACGCCGTTTT
CCGATACGGATACGGCGATCGCGACCTCCATCGTCGATGCTGTCGATGAAACCGGGTATCTCACCGTTCCTCTGGAAGAC
ATTCTGGAAAGTCTGGGCCACGACGATGTGAGCCTGGACGAAGTTGAGGCAGTGCTGAAGCGAATTCAACGCTTTGATCC
CGTTGGCGTTGCGGCAAGAGACTTACGCGATTGCCTGCTTATTCAACTTTCTCAATACGCCAAAGACACACCCTGGCTGG
CAGAGGCCAGGTTAATCGTAAGCGATCATTTAGATCTGCTGGCGAATCACGATTTCCGTAATTTAATGCGGATCACGCGC
ATTAAAGAAGACGCCCTGAAAGAGGCCATGTGCCTGATCCAATCCCTCGACCCTCGCCCTGGCCAGTCGATTCAAACCGG
CGAACCGGAGTACGTTATCCCTGATGTACTGGTCCGTAAGCACCTGGCACGCTGGGTCGTTGAGCTTAACGCAGACAGCA
TTCCACGCCTCAAAATCAACCAGCAGTATGCAGCCATGGGCGGCAACACGCGCAATGACAGCGACTCGCAGTTTATTCGC
AGCAATCTGCAGGAAGCGAAATGGTTGATTAAAAGCCTGGAAAGCCGCAATGATACGTTATTGCGCGTGAGCCGTTGCAT
CGTCGAGCAGCAGCAGGCGTTCTTCGAACACGGTGAAGAACACATGAAGCCGATGGTGCTCGCCGACATCGCTCAGGCGG
TCGAGATGCACGAATCGACTATCTCAAGGGTGACCACCCAGAAGTATTTGCATAGCCCGCGCGGCATCTTTGAATTGAAG
TATTTCTTCTCCAGCCACGTCAATACCGAAGGCGGCGGCGAAGCCTCCTCCACGGCAATTCGGGCGCTGGTGAAGAAGTT
AATTGCTGCGGAAAACCCAGCCAAACCGTTGAGCGACAGCAAGTTAACCACCCTGCTGTCGGATCAAGGTATTATGGTTG
CTCGCCGCACAGTTGCGAAGTACCGAGAGTCTTTATCCATTCCACCGTCAAACCAGCGCAAGCAGCTGGTGTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-303)

Sigma-54, DNA binding domain (Sigma54_DBD)

(317-475)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A089RH74

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.331

100

0.488

Multiple sequence alignment